Literature DB >> 33271282

Mitochondria signaling to the epigenome: A novel role for an old organelle.

Janine Hertzog Santos1.   

Abstract

Epigenetic modifications influence gene expression programs ultimately dictating physiological outcomes. In the past decades, an increasing body of work has demonstrated that the enzymes that deposit and/or remove epigenetic marks on DNA or histones use metabolites as substrates or co-factors, rendering the epigenome sensitive to metabolic changes. In this context, acetyl-CoA and α-ketoglutarate have been recognized as critical for epigenetics, impinging on histone marks and nuclear DNA methylation patterns. Given that these metabolites are primarily generated in the mitochondria through the tricarboxylic acid cycle (TCA), the requirement of proper mitochondrial function for maintenance of the epigenetic landscape seems obvious. Nevertheless, it was not until recently when the epigenomic outcomes of mitochondrial dysfunction were tested, revealing mitochondria's far-reaching impact on epigenetics. This review will focus on data that directly tested the role of mitochondria on the epigenetic landscape, the mechanisms by which mitochondrial dysfunction may dysregulate the epigenome and gene expression, and their potential implications to health and disease. Published by Elsevier Inc.

Entities:  

Keywords:  Epigenome; Gene expression; Metabolism; Mitochondria; Signaling

Mesh:

Substances:

Year:  2020        PMID: 33271282      PMCID: PMC8166959          DOI: 10.1016/j.freeradbiomed.2020.11.016

Source DB:  PubMed          Journal:  Free Radic Biol Med        ISSN: 0891-5849            Impact factor:   7.376


  80 in total

1.  Decreased mtDNA, oxidative stress, cardiomyopathy, and death from transgenic cardiac targeted human mutant polymerase gamma.

Authors:  William Lewis; Brian J Day; James J Kohler; Seyed H Hosseini; Sherine S L Chan; Elgin C Green; Chad P Haase; Erin S Keebaugh; Robert Long; Tomika Ludaway; Rodney Russ; Jeffrey Steltzer; Nina Tioleco; Robert Santoianni; William C Copeland
Journal:  Lab Invest       Date:  2006-02-19       Impact factor: 5.662

Review 2.  Mitochondrial Rieske iron-sulfur protein in pulmonary artery smooth muscle: A key primary signaling molecule in pulmonary hypertension.

Authors:  Lillian Truong; Yun-Min Zheng; Yong-Xiao Wang
Journal:  Arch Biochem Biophys       Date:  2019-01-30       Impact factor: 4.013

Review 3.  Mitochondrial retrograde signaling.

Authors:  Zhengchang Liu; Ronald A Butow
Journal:  Annu Rev Genet       Date:  2006       Impact factor: 16.830

Review 4.  Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation.

Authors:  Hao Wu; Yi Zhang
Journal:  Genes Dev       Date:  2011-12-01       Impact factor: 11.361

Review 5.  The impact of cellular metabolism on chromatin dynamics and epigenetics.

Authors:  Michael A Reid; Ziwei Dai; Jason W Locasale
Journal:  Nat Cell Biol       Date:  2017-10-23       Impact factor: 28.824

Review 6.  Circles of Life: linking metabolic and epigenetic cycles to immunity.

Authors:  Chan-Wang Jerry Lio; Stanley Ching-Cheng Huang
Journal:  Immunology       Date:  2020-06-03       Impact factor: 7.397

7.  Rotenone, deguelin, their metabolites, and the rat model of Parkinson's disease.

Authors:  Pierluigi Caboni; Todd B Sherer; Nanjing Zhang; Georgia Taylor; Hye Me Na; J Timothy Greenamyre; John E Casida
Journal:  Chem Res Toxicol       Date:  2004-11       Impact factor: 3.739

8.  Mitochondrial dysfunction remodels one-carbon metabolism in human cells.

Authors:  Xiaoyan Robert Bao; Shao-En Ong; Olga Goldberger; Jun Peng; Rohit Sharma; Dawn A Thompson; Scott B Vafai; Andrew G Cox; Eizo Marutani; Fumito Ichinose; Wolfram Goessling; Aviv Regev; Steven A Carr; Clary B Clish; Vamsi K Mootha
Journal:  Elife       Date:  2016-06-16       Impact factor: 8.140

9.  Regulation of mitochondrial biogenesis in erythropoiesis by mTORC1-mediated protein translation.

Authors:  Xin Liu; Yuannyu Zhang; Min Ni; Hui Cao; Robert A J Signer; Dan Li; Mushan Li; Zhimin Gu; Zeping Hu; Kathryn E Dickerson; Samuel E Weinberg; Navdeep S Chandel; Ralph J DeBerardinis; Feng Zhou; Zhen Shao; Jian Xu
Journal:  Nat Cell Biol       Date:  2017-05-15       Impact factor: 28.824

10.  Intracellular α-ketoglutarate maintains the pluripotency of embryonic stem cells.

Authors:  Bryce W Carey; Lydia W S Finley; Justin R Cross; C David Allis; Craig B Thompson
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

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  11 in total

Review 1.  Mitochondrial DNA damage as driver of cellular outcomes.

Authors:  Cristina A Nadalutti; Sylvette Ayala-Peña; Janine H Santos
Journal:  Am J Physiol Cell Physiol       Date:  2021-12-22       Impact factor: 4.249

Review 2.  Emerging mitochondrial signaling mechanisms in cardio-oncology: beyond oxidative stress.

Authors:  Jean C Bikomeye; Janée D Terwoord; Janine H Santos; Andreas M Beyer
Journal:  Am J Physiol Heart Circ Physiol       Date:  2022-08-05       Impact factor: 5.125

3.  Epigenetic changes induced by in utero dietary challenge result in phenotypic variability in successive generations of mice.

Authors:  Andrew Dimond; António M Galvão; Mathew Van de Pette; Steven J Millership; Wilson To; Chiara Prodani; Gráinne McNamara; Ludovica Bruno; Alessandro Sardini; Zoe Webster; James McGinty; Paul M W French; Anthony G Uren; Juan Castillo-Fernandez; William Watkinson; Anne C Ferguson-Smith; Matthias Merkenschlager; Rosalind M John; Gavin Kelsey; Amanda G Fisher
Journal:  Nat Commun       Date:  2022-05-05       Impact factor: 17.694

4.  Aberrant redox biology and epigenetic reprogramming: Co-conspirators across multiple human diseases.

Authors:  Frederick E Domann; Michael J Hitchler
Journal:  Free Radic Biol Med       Date:  2021-04-29       Impact factor: 8.101

Review 5.  Mitochondria and metabolic transitions in cardiomyocytes: lessons from development for stem cell-derived cardiomyocytes.

Authors:  Jessica C Garbern; Richard T Lee
Journal:  Stem Cell Res Ther       Date:  2021-03-12       Impact factor: 6.832

6.  Histone Acetylation Defects in Brain Precursor Cells: A Potential Pathogenic Mechanism Causing Proliferation and Differentiation Dysfunctions in Mitochondrial Aspartate-Glutamate Carrier Isoform 1 Deficiency.

Authors:  Eleonora Poeta; Sabrina Petralla; Giorgia Babini; Brunaldo Renzi; Luigi Celauro; Maria Chiara Magnifico; Simona Nicole Barile; Martina Masotti; Francesca De Chirico; Francesca Massenzio; Luigi Viggiano; Luigi Palmieri; Marco Virgili; Francesco Massimo Lasorsa; Barbara Monti
Journal:  Front Cell Neurosci       Date:  2022-01-12       Impact factor: 5.505

7.  Inhibition of DRP1 Impedes Zygotic Genome Activation and Preimplantation Development in Mice.

Authors:  Yuanyuan Li; Ning-Hua Mei; Gui-Ping Cheng; Jing Yang; Li-Quan Zhou
Journal:  Front Cell Dev Biol       Date:  2021-12-02

8.  MYC, mitochondrial metabolism and O-GlcNAcylation converge to modulate the activity and subcellular localization of DNA and RNA demethylases.

Authors:  An-Ping Lin; Zhijun Qiu; Purushoth Ethiraj; Binu Sasi; Carine Jaafar; Dinesh Rakheja; Ricardo C T Aguiar
Journal:  Leukemia       Date:  2022-01-08       Impact factor: 12.883

Review 9.  Epigenetic and metabolic regulation of epidermal homeostasis.

Authors:  Roland N Wagner; Josefina Piñón Hofbauer; Verena Wally; Barbara Kofler; Matthias Schmuth; Laura De Rosa; Michele De Luca; Johann W Bauer
Journal:  Exp Dermatol       Date:  2021-03-10       Impact factor: 3.960

Review 10.  Stress and circulating cell-free mitochondrial DNA: A systematic review of human studies, physiological considerations, and technical recommendations.

Authors:  Caroline Trumpff; Jeremy Michelson; Claudia J Lagranha; Veronica Taleon; Kalpita R Karan; Gabriel Sturm; Daniel Lindqvist; Johan Fernström; Dirk Moser; Brett A Kaufman; Martin Picard
Journal:  Mitochondrion       Date:  2021-04-09       Impact factor: 4.160

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