Literature DB >> 33953398

A lysine-cysteine redox switch with an NOS bridge regulates enzyme function.

Marie Wensien1,2, Fabian Rabe von Pappenheim1,2, Lisa-Marie Funk1,2, Patrick Kloskowski1,2, Ute Curth3, Ulf Diederichsen4, Jon Uranga5, Jin Ye5, Pan Fang6, Kuan-Ting Pan6, Henning Urlaub6,7, Ricardo A Mata5, Viktor Sautner1,2, Kai Tittmann8,9.   

Abstract

Disulfide bonds between cysteine residues are important post-translational modifications in proteins that have critical roles for protein structure and stability, as redox-active catalytic groups in enzymes or allosteric redox switches that govern protein function1-4. In addition to forming disulfide bridges, cysteine residues are susceptible to oxidation by reactive oxygen species, and are thus central not only to the scavenging of these but also to cellular signalling and communication in biological as well as pathological contexts5,6. Oxidized cysteine species are highly reactive and may form covalent conjugates with, for example, tyrosines in the active sites of some redox enzymes7,8. However, to our knowledge, regulatory switches with covalent crosslinks other than disulfides have not previously been demonstrated. Here we report the discovery of a covalent crosslink between a cysteine and a lysine residue with a NOS bridge that serves as an allosteric redox switch in the transaldolase enzyme of Neisseria gonorrhoeae, the pathogen that causes gonorrhoea. X-ray structure analysis of the protein in the oxidized and reduced state reveals a loaded-spring mechanism that involves a structural relaxation upon redox activation, which is propagated from the allosteric redox switch at the protein surface to the active site in the protein interior. This relaxation leads to a reconfiguration of key catalytic residues and elicits an increase in enzymatic activity of several orders of magnitude. The redox switch is highly conserved in related transaldolases from other members of the Neisseriaceae; for example, it is present in the transaldolase of Neisseria meningitides (a pathogen that is the primary cause of meningitis and septicaemia in children). We surveyed the Protein Data Bank and found that the NOS bridge exists in diverse protein families across all domains of life (including Homo sapiens) and that it is often located at catalytic or regulatory hotspots. Our findings will inform strategies for the design of proteins and peptides, as well as the development of new classes of drugs and antibodies that target the lysine-cysteine redox switch9,10.

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Year:  2021        PMID: 33953398     DOI: 10.1038/s41586-021-03513-3

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  48 in total

1.  Crystal structure of the precursor of galactose oxidase: an unusual self-processing enzyme.

Authors:  S J Firbank; M S Rogers; C M Wilmot; D M Dooley; M A Halcrow; P F Knowles; M J McPherson; S E Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

2.  Structural basis for modulation of a G-protein-coupled receptor by allosteric drugs.

Authors:  Ron O Dror; Hillary F Green; Celine Valant; David W Borhani; James R Valcourt; Albert C Pan; Daniel H Arlow; Meritxell Canals; J Robert Lane; Raphaël Rahmani; Jonathan B Baell; Patrick M Sexton; Arthur Christopoulos; David E Shaw
Journal:  Nature       Date:  2013-10-13       Impact factor: 49.962

Review 3.  Cysteine-mediated redox signaling: chemistry, biology, and tools for discovery.

Authors:  Candice E Paulsen; Kate S Carroll
Journal:  Chem Rev       Date:  2013-03-20       Impact factor: 60.622

Review 4.  The design of covalent allosteric drugs.

Authors:  Ruth Nussinov; Chung-Jung Tsai
Journal:  Annu Rev Pharmacol Toxicol       Date:  2014-08-21       Impact factor: 13.820

5.  Control of enzyme activity by an engineered disulfide bond.

Authors:  M Matsumura; B W Matthews
Journal:  Science       Date:  1989-02-10       Impact factor: 47.728

6.  Novel thioether bond revealed by a 1.7 A crystal structure of galactose oxidase.

Authors:  N Ito; S E Phillips; C Stevens; Z B Ogel; M J McPherson; J N Keen; K D Yadav; P F Knowles
Journal:  Nature       Date:  1991-03-07       Impact factor: 49.962

Review 7.  Disulfide bonds and protein folding.

Authors:  W J Wedemeyer; E Welker; M Narayan; H A Scheraga
Journal:  Biochemistry       Date:  2000-04-18       Impact factor: 3.162

Review 8.  Disulfide bonds as switches for protein function.

Authors:  Philip J Hogg
Journal:  Trends Biochem Sci       Date:  2003-04       Impact factor: 13.807

9.  A periplasmic reducing system protects single cysteine residues from oxidation.

Authors:  Matthieu Depuydt; Stephen E Leonard; Didier Vertommen; Katleen Denoncin; Pierre Morsomme; Khadija Wahni; Joris Messens; Kate S Carroll; Jean-François Collet
Journal:  Science       Date:  2009-11-20       Impact factor: 47.728

10.  Identification of a protein required for disulfide bond formation in vivo.

Authors:  J C Bardwell; K McGovern; J Beckwith
Journal:  Cell       Date:  1991-11-01       Impact factor: 41.582

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  11 in total

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Authors:  Jérôme Tubiana; Dina Schneidman-Duhovny; Haim J Wolfson
Journal:  Nat Methods       Date:  2022-05-30       Impact factor: 28.547

Review 2.  Design and engineering of allosteric communications in proteins.

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Journal:  Curr Opin Struct Biol       Date:  2022-02-15       Impact factor: 6.809

Review 3.  New covalent bonding ability for proteins.

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Journal:  Protein Sci       Date:  2021-11-16       Impact factor: 6.725

Review 4.  Cysteine Oxidation in Proteins: Structure, Biophysics, and Simulation.

Authors:  Diego Garrido Ruiz; Angelica Sandoval-Perez; Amith Vikram Rangarajan; Emma L Gunderson; Matthew P Jacobson
Journal:  Biochemistry       Date:  2022-09-26       Impact factor: 3.321

5.  Spontaneous Orthogonal Protein Crosslinking via a Genetically Encoded 2-Carboxy-4-Aryl-1,2,3-Triazole.

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Journal:  Angew Chem Int Ed Engl       Date:  2022-03-30       Impact factor: 16.823

Review 6.  Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology.

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Journal:  Nat Rev Mol Cell Biol       Date:  2022-02-21       Impact factor: 113.915

7.  Recognizing lysine-cysteine crosslinks in proteins.

Authors:  Brian W Matthews
Journal:  Protein Sci       Date:  2021-07-05       Impact factor: 6.993

Review 8.  Oxidative Crosslinking of Peptides and Proteins: Mechanisms of Formation, Detection, Characterization and Quantification.

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Journal:  Molecules       Date:  2021-12-21       Impact factor: 4.411

9.  A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life.

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10.  Widespread occurrence of covalent lysine-cysteine redox switches in proteins.

Authors:  Fabian Rabe von Pappenheim; Marie Wensien; Jin Ye; Jon Uranga; Iker Irisarri; Jan de Vries; Lisa-Marie Funk; Ricardo A Mata; Kai Tittmann
Journal:  Nat Chem Biol       Date:  2022-02-14       Impact factor: 16.174

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