Literature DB >> 33238161

Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms.

Bing-Rui Zhou1, Hanqiao Feng1, Seyit Kale2, Tara Fox3, Htet Khant3, Natalia de Val3, Rodolfo Ghirlando4, Anna R Panchenko5, Yawen Bai6.   

Abstract

The repeating structural unit of metazoan chromatin is the chromatosome, a nucleosome bound to a linker histone, H1. There are 11 human H1 isoforms with diverse cellular functions, but how they interact with the nucleosome remains elusive. Here, we determined the cryoelectron microscopy (cryo-EM) structures of chromatosomes containing 197 bp DNA and three different human H1 isoforms, respectively. The globular domains of all three H1 isoforms bound to the nucleosome dyad. However, the flanking/linker DNAs displayed substantial distinct dynamic conformations. Nuclear magnetic resonance (NMR) and H1 tail-swapping cryo-EM experiments revealed that the C-terminal tails of the H1 isoforms mainly controlled the flanking DNA orientations. We also observed partial ordering of the core histone H2A C-terminal and H3 N-terminal tails in the chromatosomes. Our results provide insights into the structures and dynamics of the chromatosomes and have implications for the structure and function of chromatin. Published by Elsevier Inc.

Entities:  

Keywords:  Cryo-EM; NMR; chromatin structure; chromatosome; chromatosome dynamics; chromatosome structure; linker histone isoform; linker histone tail; nucleosome; single-chain antibody

Mesh:

Substances:

Year:  2020        PMID: 33238161      PMCID: PMC7796963          DOI: 10.1016/j.molcel.2020.10.038

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  21 in total

1.  Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization.

Authors:  Pavan Choppakatla; Bastiaan Dekker; Erin E Cutts; Alessandro Vannini; Job Dekker; Hironori Funabiki
Journal:  Elife       Date:  2021-08-18       Impact factor: 8.140

2.  Structural Mechanism of TAF-Iβ Chaperone Function on Linker Histone H1.10.

Authors:  Haniqao Feng; Bing-Rui Zhou; Charles D Schwieters; Yawen Bai
Journal:  J Mol Biol       Date:  2022-07-21       Impact factor: 6.151

Review 3.  Visualizing Conformational Ensembles of the Nucleosome by NMR.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  ACS Chem Biol       Date:  2022-02-23       Impact factor: 4.634

4.  H1.0 C Terminal Domain Is Integral for Altering Transcription Factor Binding within Nucleosomes.

Authors:  Nathaniel L Burge; Jenna L Thuma; Ziyong Z Hong; Kevin B Jamison; Jennifer J Ottesen; Michael G Poirier
Journal:  Biochemistry       Date:  2022-04-04       Impact factor: 3.321

Review 5.  3D chromosomal architecture in germinal center B cells and its alterations in lymphomagenesis.

Authors:  Antonin Papin; Ethel Cesarman; Ari Melnick
Journal:  Curr Opin Genet Dev       Date:  2022-05-09       Impact factor: 4.665

Review 6.  Unraveling linker histone interactions in nucleosomes.

Authors:  Fanfan Hao; Seyit Kale; Stefan Dimitrov; Jeffrey J Hayes
Journal:  Curr Opin Struct Biol       Date:  2021-07-08       Impact factor: 6.809

Review 7.  Principles of nucleosome recognition by chromatin factors and enzymes.

Authors:  Robert K McGinty; Song Tan
Journal:  Curr Opin Struct Biol       Date:  2021-06-28       Impact factor: 6.809

Review 8.  Histone H1 Mutations in Lymphoma: A Link(er) between Chromatin Organization, Developmental Reprogramming, and Cancer.

Authors:  Alexey A Soshnev; C David Allis; Ethel Cesarman; Ari M Melnick
Journal:  Cancer Res       Date:  2021-09-27       Impact factor: 13.312

9.  DNA sequence-dependent positioning of the linker histone in a nucleosome: A single-pair FRET study.

Authors:  Madhura De; Mehmet Ali Öztürk; Sebastian Isbaner; Katalin Tóth; Rebecca C Wade
Journal:  Biophys J       Date:  2021-07-20       Impact factor: 3.699

10.  Binding Dynamics of Disordered Linker Histone H1 with a Nucleosomal Particle.

Authors:  Hao Wu; Yamini Dalal; Garegin A Papoian
Journal:  J Mol Biol       Date:  2021-02-20       Impact factor: 6.151

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