Literature DB >> 35550952

3D chromosomal architecture in germinal center B cells and its alterations in lymphomagenesis.

Antonin Papin1, Ethel Cesarman1, Ari Melnick2.   

Abstract

In eukaryotic cells, the genome is three dimensionally (3D) organized with DNA interaction dynamics and topology changes that regulate gene expression and drive cell fate. Upon antigen stimulation, naive B cells are activated and form germinal centers (GC) for the generation of memory B cells and plasma cells. Thereby, terminal B-cell differentiation and associated humoral immune response require massive but rigorous 3D DNA reorganization. Here, we review the dynamics of genome reorganization during GC formation and the impact of its alterations on lymphomagenesis from the nucleosome structure to the higher order chromosome organization. We particularly discuss the identified architects of 3D DNA in GC B cells and the role of their mutations in B-cell lymphomas.
Copyright © 2022 Elsevier Ltd. All rights reserved.

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Year:  2022        PMID: 35550952      PMCID: PMC9254163          DOI: 10.1016/j.gde.2022.101915

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   4.665


  42 in total

Review 1.  Genome folding through loop extrusion by SMC complexes.

Authors:  Iain F Davidson; Jan-Michael Peters
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-25       Impact factor: 94.444

Review 2.  Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function.

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Journal:  Mol Cell       Date:  2020-01-27       Impact factor: 17.970

3.  A Robust Method for the Purification and Characterization of Recombinant Human Histone H1 Variants.

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4.  OCT2 pre-positioning facilitates cell fate transition and chromatin architecture changes in humoral immunity.

Authors:  Ashley S Doane; Chi-Shuen Chu; Dafne Campigli Di Giammartino; Martín A Rivas; Johannes C Hellmuth; Yanwen Jiang; Nevin Yusufova; Alicia Alonso; Robert G Roeder; Effie Apostolou; Ari M Melnick; Olivier Elemento
Journal:  Nat Immunol       Date:  2021-09-23       Impact factor: 25.606

5.  Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma.

Authors:  Anupama Reddy; Jenny Zhang; Nicholas S Davis; Andrea B Moffitt; Cassandra L Love; Alexander Waldrop; Sirpa Leppa; Annika Pasanen; Leo Meriranta; Marja-Liisa Karjalainen-Lindsberg; Peter Nørgaard; Mette Pedersen; Anne O Gang; Estrid Høgdall; Tayla B Heavican; Waseem Lone; Javeed Iqbal; Qiu Qin; Guojie Li; So Young Kim; Jane Healy; Kristy L Richards; Yuri Fedoriw; Leon Bernal-Mizrachi; Jean L Koff; Ashley D Staton; Christopher R Flowers; Ora Paltiel; Neta Goldschmidt; Maria Calaminici; Andrew Clear; John Gribben; Evelyn Nguyen; Magdalena B Czader; Sarah L Ondrejka; Angela Collie; Eric D Hsi; Eric Tse; Rex K H Au-Yeung; Yok-Lam Kwong; Gopesh Srivastava; William W L Choi; Andrew M Evens; Monika Pilichowska; Manju Sengar; Nishitha Reddy; Shaoying Li; Amy Chadburn; Leo I Gordon; Elaine S Jaffe; Shawn Levy; Rachel Rempel; Tiffany Tzeng; Lanie E Happ; Tushar Dave; Deepthi Rajagopalan; Jyotishka Datta; David B Dunson; Sandeep S Dave
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

6.  EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains.

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Journal:  Nat Genet       Date:  2019-01-28       Impact factor: 38.330

7.  Unique Immune Cell Coactivators Specify Locus Control Region Function and Cell Stage.

Authors:  Chi-Shuen Chu; Johannes C Hellmuth; Rajat Singh; Hsia-Yuan Ying; Lucy Skrabanek; Matthew R Teater; Ashley S Doane; Olivier Elemento; Ari M Melnick; Robert G Roeder
Journal:  Mol Cell       Date:  2020-11-23       Impact factor: 19.328

Review 8.  Germinal center-derived lymphomas: The darkest side of humoral immunity.

Authors:  Coraline Mlynarczyk; Lorena Fontán; Ari Melnick
Journal:  Immunol Rev       Date:  2019-03       Impact factor: 12.988

9.  The expanding landscape of 'oncohistone' mutations in human cancers.

Authors:  Benjamin A Nacev; Lijuan Feng; John D Bagert; Agata E Lemiesz; JianJiong Gao; Alexey A Soshnev; Ritika Kundra; Nikolaus Schultz; Tom W Muir; C David Allis
Journal:  Nature       Date:  2019-03-20       Impact factor: 49.962

10.  Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation.

Authors:  Roser Vilarrasa-Blasi; Paula Soler-Vila; Núria Verdaguer-Dot; Núria Russiñol; Marco Di Stefano; Vicente Chapaprieta; Guillem Clot; Irene Farabella; Pol Cuscó; Marta Kulis; Xabier Agirre; Felipe Prosper; Renée Beekman; Silvia Beà; Dolors Colomer; Hendrik G Stunnenberg; Ivo Gut; Elias Campo; Marc A Marti-Renom; José Ignacio Martin-Subero
Journal:  Nat Commun       Date:  2021-01-28       Impact factor: 14.919

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