Literature DB >> 33232656

Unique Immune Cell Coactivators Specify Locus Control Region Function and Cell Stage.

Chi-Shuen Chu1, Johannes C Hellmuth2, Rajat Singh2, Hsia-Yuan Ying2, Lucy Skrabanek3, Matthew R Teater2, Ashley S Doane4, Olivier Elemento5, Ari M Melnick6, Robert G Roeder7.   

Abstract

Locus control region (LCR) functions define cellular identity and have critical roles in diseases such as cancer, although the hierarchy of structural components and associated factors that drive functionality are incompletely understood. Here we show that OCA-B, a B cell-specific coactivator essential for germinal center (GC) formation, forms a ternary complex with the lymphoid-enriched OCT2 and GC-specific MEF2B transcription factors and that this complex occupies and activates an LCR that regulates the BCL6 proto-oncogene and is uniquely required by normal and malignant GC B cells. Mechanistically, through OCA-B-MED1 interactions, this complex is required for Mediator association with the BCL6 promoter. Densely tiled CRISPRi screening indicates that only LCR segments heavily bound by this ternary complex are essential for its function. Our results demonstrate how an intimately linked complex of lineage- and stage-specific factors converges on specific and highly essential enhancer elements to drive the function of a cell-type-defining LCR.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  B cell lymphoma; BCL6; CRISPR; MEF2B; Mediator complex; OCA-B; OCT2; enhancer; germinal center; locus control region

Mesh:

Substances:

Year:  2020        PMID: 33232656      PMCID: PMC7737631          DOI: 10.1016/j.molcel.2020.10.036

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   19.328


  85 in total

1.  A novel B cell-derived coactivator potentiates the activation of immunoglobulin promoters by octamer-binding transcription factors.

Authors:  Y Luo; H Fujii; T Gerster; R G Roeder
Journal:  Cell       Date:  1992-10-16       Impact factor: 41.582

2.  GATA-dependent recruitment of MEF2 proteins to target promoters.

Authors:  S Morin; F Charron; L Robitaille; M Nemer
Journal:  EMBO J       Date:  2000-05-02       Impact factor: 11.598

3.  Cutting edge: The transcription factor Bob1 counteracts B cell activation and regulates miR-146a in B cells.

Authors:  John M Lindner; Hiroyuki Kayo; Sebastian Hedlund; Yoko Fukuda; Taro Fukao; Peter J Nielsen
Journal:  J Immunol       Date:  2014-04-09       Impact factor: 5.422

4.  MEF2B is a potent transactivator expressed in early myogenic lineages.

Authors:  J D Molkentin; A B Firulli; B L Black; J F Martin; C M Hustad; N Copeland; N Jenkins; G Lyons; E N Olson
Journal:  Mol Cell Biol       Date:  1996-07       Impact factor: 4.272

5.  Coactivator condensation at super-enhancers links phase separation and gene control.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Ann Boija; Isaac A Klein; Eliot L Coffey; Krishna Shrinivas; Brian J Abraham; Nancy M Hannett; Alicia V Zamudio; John C Manteiga; Charles H Li; Yang E Guo; Daniel S Day; Jurian Schuijers; Eliza Vasile; Sohail Malik; Denes Hnisz; Tong Ihn Lee; Ibrahim I Cisse; Robert G Roeder; Phillip A Sharp; Arup K Chakraborty; Richard A Young
Journal:  Science       Date:  2018-06-21       Impact factor: 47.728

6.  Cooperative transcriptional repression by BCL6 and BACH2 in germinal center B-cell differentiation.

Authors:  Chuanxin Huang; Huimin Geng; Isaac Boss; Ling Wang; Ari Melnick
Journal:  Blood       Date:  2013-11-25       Impact factor: 22.113

7.  Differential requirement for OBF-1 during antibody-secreting cell differentiation.

Authors:  Lynn M Corcoran; Jhagvaral Hasbold; Wendy Dietrich; Edwin Hawkins; Axel Kallies; Stephen L Nutt; David M Tarlinton; Patrick Matthias; Philip D Hodgkin
Journal:  J Exp Med       Date:  2005-05-02       Impact factor: 14.307

8.  Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.

Authors:  Fan Lai; Ulf A Orom; Matteo Cesaroni; Malte Beringer; Dylan J Taatjes; Gerd A Blobel; Ramin Shiekhattar
Journal:  Nature       Date:  2013-02-17       Impact factor: 49.962

9.  MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation.

Authors:  Julia R Pon; Jackson Wong; Saeed Saberi; Olivia Alder; Michelle Moksa; S-W Grace Cheng; Gregg B Morin; Pamela A Hoodless; Martin Hirst; Marco A Marra
Journal:  Nat Commun       Date:  2015-08-06       Impact factor: 14.919

10.  Selective Mediator dependence of cell-type-specifying transcription.

Authors:  Martin G Jaeger; Björn Schwalb; Sebastian D Mackowiak; Taras Velychko; Alexander Hanzl; Hana Imrichova; Matthias Brand; Benedikt Agerer; Someth Chorn; Behnam Nabet; Fleur M Ferguson; André C Müller; Andreas Bergthaler; Nathanael S Gray; James E Bradner; Christoph Bock; Denes Hnisz; Patrick Cramer; Georg E Winter
Journal:  Nat Genet       Date:  2020-06-01       Impact factor: 38.330

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  10 in total

1.  Mediator subunit MED1 is required for E2A-PBX1-mediated oncogenic transcription and leukemic cell growth.

Authors:  Yu-Ling Lee; Keiichi Ito; Wen-Chieh Pi; I-Hsuan Lin; Chi-Shuen Chu; Sohail Malik; I-Hsin Cheng; Wei-Yi Chen; Robert G Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

2.  OCT2 pre-positioning facilitates cell fate transition and chromatin architecture changes in humoral immunity.

Authors:  Ashley S Doane; Chi-Shuen Chu; Dafne Campigli Di Giammartino; Martín A Rivas; Johannes C Hellmuth; Yanwen Jiang; Nevin Yusufova; Alicia Alonso; Robert G Roeder; Effie Apostolou; Ari M Melnick; Olivier Elemento
Journal:  Nat Immunol       Date:  2021-09-23       Impact factor: 25.606

Review 3.  Three-dimensional genome organization in immune cell fate and function.

Authors:  Sergi Cuartero; Grégoire Stik; Ralph Stadhouders
Journal:  Nat Rev Immunol       Date:  2022-09-20       Impact factor: 108.555

4.  OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage.

Authors:  Xiaoli S Wu; Xue-Yan He; Jonathan J Ipsaro; Yu-Han Huang; Jonathan B Preall; David Ng; Yan Ting Shue; Julien Sage; Mikala Egeblad; Leemor Joshua-Tor; Christopher R Vakoc
Journal:  Nature       Date:  2022-05-16       Impact factor: 69.504

Review 5.  3D chromosomal architecture in germinal center B cells and its alterations in lymphomagenesis.

Authors:  Antonin Papin; Ethel Cesarman; Ari Melnick
Journal:  Curr Opin Genet Dev       Date:  2022-05-09       Impact factor: 4.665

Review 6.  Histone H1 Mutations in Lymphoma: A Link(er) between Chromatin Organization, Developmental Reprogramming, and Cancer.

Authors:  Alexey A Soshnev; C David Allis; Ethel Cesarman; Ari M Melnick
Journal:  Cancer Res       Date:  2021-09-27       Impact factor: 13.312

Review 7.  The Mediator complex as a master regulator of transcription by RNA polymerase II.

Authors:  William F Richter; Shraddha Nayak; Janet Iwasa; Dylan J Taatjes
Journal:  Nat Rev Mol Cell Biol       Date:  2022-06-20       Impact factor: 113.915

Review 8.  Biology of Germinal Center B Cells Relating to Lymphomagenesis.

Authors:  Katia Basso
Journal:  Hemasphere       Date:  2021-06-01

Review 9.  Deciphering the Complexity of 3D Chromatin Organization Driving Lymphopoiesis and Lymphoid Malignancies.

Authors:  Laurianne Scourzic; Eralda Salataj; Effie Apostolou
Journal:  Front Immunol       Date:  2021-05-14       Impact factor: 7.561

10.  Identification of Therapeutic Targets and Prognostic Biomarkers among Genes from the Mediator Complex Family in the Hepatocellular Carcinoma Tumour-Immune Microenvironment.

Authors:  Wei Tan; Shuai Peng; Zhuokai Li; Ruiqian Zhang; Yangrui Xiao; Xiao Chen; Jinde Zhu; Bingrong Li; Xinliang Lv
Journal:  Comput Math Methods Med       Date:  2022-01-13       Impact factor: 2.238

  10 in total

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