Literature DB >> 33221055

Reproducible and Interpretable Spiculation Quantification for Lung Cancer Screening.

Wookjin Choi1, Saad Nadeem2, Sadegh R Alam3, Joseph O Deasy3, Allen Tannenbaum4, Wei Lu3.   

Abstract

Spiculations are important predictors of lung cancer malignancy, which are spikes on the surface of the pulmonary nodules. In this study, we proposed an interpretable and parameter-free technique to quantify the spiculation using area distortion metric obtained by the conformal (angle-preserving) spherical parameterization. We exploit the insight that for an angle-preserved spherical mapping of a given nodule, the corresponding negative area distortion precisely characterizes the spiculations on that nodule. We introduced novel spiculation scores based on the area distortion metric and spiculation measures. We also semi-automatically segment lung nodule (for reproducibility) as well as vessel and wall attachment to differentiate the real spiculations from lobulation and attachment. A simple pathological malignancy prediction model is also introduced. We used the publicly-available LIDC-IDRI dataset pathologists (strong-label) and radiologists (weak-label) ratings to train and test radiomics models containing this feature, and then externally validate the models. We achieved AUC = 0.80 and 0.76, respectively, with the models trained on the 811 weakly-labeled LIDC datasets and tested on the 72 strongly-labeled LIDC and 73 LUNGx datasets; the previous best model for LUNGx had AUC = 0.68. The number-of-spiculations feature was found to be highly correlated (Spearman's rank correlation coefficient ρ=0.44) with the radiologists' spiculation score. We developed a reproducible and interpretable, parameter-free technique for quantifying spiculations on nodules. The spiculation quantification measures was then applied to the radiomics framework for pathological malignancy prediction with reproducible semi-automatic segmentation of nodule. Using our interpretable features (size, attachment, spiculation, lobulation), we were able to achieve higher performance than previous models. In the future, we will exhaustively test our model for lung cancer screening in the clinic.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Conformal Mapping; Lung Cancer Screening; Spiculation

Mesh:

Year:  2020        PMID: 33221055      PMCID: PMC7920914          DOI: 10.1016/j.cmpb.2020.105839

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  23 in total

1.  Toward Understanding the Size Dependence of Shape Features for Predicting Spiculation in Lung Nodules for Computer-Aided Diagnosis.

Authors:  Ron Niehaus; Daniela Stan Raicu; Jacob Furst; Samuel Armato
Journal:  J Digit Imaging       Date:  2015-12       Impact factor: 4.056

2.  LUNGx Challenge for computerized lung nodule classification.

Authors:  Samuel G Armato; Karen Drukker; Feng Li; Lubomir Hadjiiski; Georgia D Tourassi; Roger M Engelmann; Maryellen L Giger; George Redmond; Keyvan Farahani; Justin S Kirby; Laurence P Clarke
Journal:  J Med Imaging (Bellingham)       Date:  2016-12-19

3.  The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.

Authors:  Kenneth Clark; Bruce Vendt; Kirk Smith; John Freymann; Justin Kirby; Paul Koppel; Stephen Moore; Stanley Phillips; David Maffitt; Michael Pringle; Lawrence Tarbox; Fred Prior
Journal:  J Digit Imaging       Date:  2013-12       Impact factor: 4.056

4.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans.

Authors:  Samuel G Armato; Geoffrey McLennan; Luc Bidaut; Michael F McNitt-Gray; Charles R Meyer; Anthony P Reeves; Binsheng Zhao; Denise R Aberle; Claudia I Henschke; Eric A Hoffman; Ella A Kazerooni; Heber MacMahon; Edwin J R Van Beeke; David Yankelevitz; Alberto M Biancardi; Peyton H Bland; Matthew S Brown; Roger M Engelmann; Gary E Laderach; Daniel Max; Richard C Pais; David P Y Qing; Rachael Y Roberts; Amanda R Smith; Adam Starkey; Poonam Batrah; Philip Caligiuri; Ali Farooqi; Gregory W Gladish; C Matilda Jude; Reginald F Munden; Iva Petkovska; Leslie E Quint; Lawrence H Schwartz; Baskaran Sundaram; Lori E Dodd; Charles Fenimore; David Gur; Nicholas Petrick; John Freymann; Justin Kirby; Brian Hughes; Alessi Vande Casteele; Sangeeta Gupte; Maha Sallamm; Michael D Heath; Michael H Kuhn; Ekta Dharaiya; Richard Burns; David S Fryd; Marcos Salganicoff; Vikram Anand; Uri Shreter; Stephen Vastagh; Barbara Y Croft
Journal:  Med Phys       Date:  2011-02       Impact factor: 4.071

5.  Radiological Image Traits Predictive of Cancer Status in Pulmonary Nodules.

Authors:  Ying Liu; Yoganand Balagurunathan; Thomas Atwater; Sanja Antic; Qian Li; Ronald C Walker; Gary T Smith; Pierre P Massion; Matthew B Schabath; Robert J Gillies
Journal:  Clin Cancer Res       Date:  2016-09-23       Impact factor: 12.531

6.  PSIGAN: Joint Probabilistic Segmentation and Image Distribution Matching for Unpaired Cross-Modality Adaptation-Based MRI Segmentation.

Authors:  Jue Jiang; Yu-Chi Hu; Neelam Tyagi; Andreas Rimner; Nancy Lee; Joseph O Deasy; Sean Berry; Harini Veeraraghavan
Journal:  IEEE Trans Med Imaging       Date:  2020-11-30       Impact factor: 10.048

7.  Cancer statistics, 2016.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2016-01-07       Impact factor: 508.702

8.  Performance of ACR Lung-RADS in a clinical CT lung screening program.

Authors:  Brady J McKee; Shawn M Regis; Andrea B McKee; Sebastian Flacke; Christoph Wald
Journal:  J Am Coll Radiol       Date:  2014-08-28       Impact factor: 5.532

9.  Radiomics analysis of pulmonary nodules in low-dose CT for early detection of lung cancer.

Authors:  Wookjin Choi; Jung Hun Oh; Sadegh Riyahi; Chia-Ju Liu; Feng Jiang; Wengen Chen; Charles White; Andreas Rimner; James G Mechalakos; Joseph O Deasy; Wei Lu
Journal:  Med Phys       Date:  2018-03-12       Impact factor: 4.071

10.  Predicting Malignant Nodules from Screening CT Scans.

Authors:  Samuel Hawkins; Hua Wang; Ying Liu; Alberto Garcia; Olya Stringfield; Henry Krewer; Qian Li; Dmitry Cherezov; Robert A Gatenby; Yoganand Balagurunathan; Dmitry Goldgof; Matthew B Schabath; Lawrence Hall; Robert J Gillies
Journal:  J Thorac Oncol       Date:  2016-07-13       Impact factor: 15.609

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  2 in total

1.  CIRDataset: A large-scale Dataset for Clinically-Interpretable lung nodule Radiomics and malignancy prediction.

Authors:  Wookjin Choi; Navdeep Dahiya; Saad Nadeem
Journal:  Med Image Comput Comput Assist Interv       Date:  2022-09-16

2.  A predictive nomogram for lymph node metastasis in part-solid invasive lung adenocarcinoma: A complement to the IASLC novel grading system.

Authors:  Zhaoming Gao; Xiaofei Wang; Tao Zuo; Mengzhe Zhang; Zhenfa Zhang
Journal:  Front Oncol       Date:  2022-08-15       Impact factor: 5.738

  2 in total

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