Literature DB >> 33203571

Germline Variants That Affect Tumor Progression.

Ajay Chatrath1, Aakrosh Ratan2, Anindya Dutta3.   

Abstract

Germline variants have a rich history of being studied in the context of cancer risk. Emerging studies now suggest that germline variants contribute not only to cancer risk but to tumor progression as well. In this opinion article, we discuss the initial discoveries associating germline variants with patient outcome and the mechanisms by which germline variants affect molecular pathways. Germline variants affect molecular pathways through amino acid changes, alteration of splicing patterns or expression of genes, influencing the selection for somatic mutations, and causing genome-wide mutational enrichment. These molecular alterations can lead to tumor phenotypes that become clinically apparent such as metastasis, alterations to the immune microenvironment, and modulation of therapeutic response. Overall, the growing body of evidence suggests that germline variants play a larger role in tumor progression than has been previously appreciated and that germline variation holds substantial potential for improving personalized medicine and patient outcomes.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  cancer therapy; germline variants; personalized medicine; tumor progression

Mesh:

Year:  2020        PMID: 33203571      PMCID: PMC8043969          DOI: 10.1016/j.tig.2020.10.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  52 in total

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Authors:  Mahmoud Ghandi; Franklin W Huang; Judit Jané-Valbuena; Gregory V Kryukov; Christopher C Lo; E Robert McDonald; Jordi Barretina; Ellen T Gelfand; Craig M Bielski; Haoxin Li; Kevin Hu; Alexander Y Andreev-Drakhlin; Jaegil Kim; Julian M Hess; Brian J Haas; François Aguet; Barbara A Weir; Michael V Rothberg; Brenton R Paolella; Michael S Lawrence; Rehan Akbani; Yiling Lu; Hong L Tiv; Prafulla C Gokhale; Antoine de Weck; Ali Amin Mansour; Coyin Oh; Juliann Shih; Kevin Hadi; Yanay Rosen; Jonathan Bistline; Kavitha Venkatesan; Anupama Reddy; Dmitriy Sonkin; Manway Liu; Joseph Lehar; Joshua M Korn; Dale A Porter; Michael D Jones; Javad Golji; Giordano Caponigro; Jordan E Taylor; Caitlin M Dunning; Amanda L Creech; Allison C Warren; James M McFarland; Mahdi Zamanighomi; Audrey Kauffmann; Nicolas Stransky; Marcin Imielinski; Yosef E Maruvka; Andrew D Cherniack; Aviad Tsherniak; Francisca Vazquez; Jacob D Jaffe; Andrew A Lane; David M Weinstock; Cory M Johannessen; Michael P Morrissey; Frank Stegmeier; Robert Schlegel; William C Hahn; Gad Getz; Gordon B Mills; Jesse S Boehm; Todd R Golub; Levi A Garraway; William R Sellers
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8.  The Bim deletion polymorphism clinical profile and its relation with tyrosine kinase inhibitor resistance in Chinese patients with non-small cell lung cancer.

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Review 9.  Design and Implementing Pharmacogenomics Study in Cancer.

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  4 in total

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Authors:  Brittany N Chao; Danielle M Carrick; Kelly K Filipski; Stefanie A Nelson
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2.  Integrated bioinformatic pipeline using whole-exome and RNAseq data to identify germline variants correlated with cancer.

Authors:  Divya Sahu; Ajay Chatrath; Aakrosh Ratan; Anindya Dutta
Journal:  STAR Protoc       Date:  2022-04-04

3.  Clinical application of liquid biopsy in cancer patients.

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Journal:  BMC Cancer       Date:  2022-04-15       Impact factor: 4.638

4.  An integrated somatic and germline approach to aid interpretation of germline variants of uncertain significance in cancer susceptibility genes.

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Journal:  Front Oncol       Date:  2022-08-25       Impact factor: 5.738

  4 in total

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