Literature DB >> 33186723

NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing.

Steen Moeller1, Pramod Kumar Pisharady2, Sudhir Ramanna2, Christophe Lenglet2, Xiaoping Wu2, Logan Dowdle2, Essa Yacoub2, Kamil Uğurbil2, Mehmet Akçakaya3.   

Abstract

Diffusion-weighted magnetic resonance imaging (dMRI) has found great utility for a wide range of neuroscientific and clinical applications. However, high-resolution dMRI, which is required for improved delineation of fine brain structures and connectomics, is hampered by its low signal-to-noise ratio (SNR). Since dMRI relies on the acquisition of multiple different diffusion weighted images of the same anatomy, it is well-suited for denoising methods that utilize correlations across the image series to improve the apparent SNR and the subsequent data analysis. In this work, we introduce and quantitatively evaluate a comprehensive framework, NOise Reduction with DIstribution Corrected (NORDIC) PCA method for processing dMRI. NORDIC uses low-rank modeling of g-factor-corrected complex dMRI reconstruction and non-asymptotic random matrix distributions to remove signal components which cannot be distinguished from thermal noise. The utility of the proposed framework for denoising dMRI is demonstrated on both simulations and experimental data obtained at 3 Tesla with different resolutions using human connectome project style acquisitions. The proposed framework leads to substantially enhanced quantitative performance for estimating diffusion tractography related measures and for resolving crossing fibers as compared to a conventional/state-of-the-art dMRI denoising method.
Copyright © 2020. Published by Elsevier Inc.

Entities:  

Keywords:  Brain imaging; Denoising; Diffusion MRI; Human connectome project; Multiband; Simultaneous multi-slice; Singular value decomposition

Year:  2020        PMID: 33186723     DOI: 10.1016/j.neuroimage.2020.117539

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  11 in total

1.  Uncertainty in denoising of MRSI using low-rank methods.

Authors:  William T Clarke; Mark Chiew
Journal:  Magn Reson Med       Date:  2021-09-21       Impact factor: 3.737

Review 2.  Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact.

Authors:  Qiuyun Fan; Cornelius Eichner; Maryam Afzali; Lars Mueller; Chantal M W Tax; Mathias Davids; Mirsad Mahmutovic; Boris Keil; Berkin Bilgic; Kawin Setsompop; Hong-Hsi Lee; Qiyuan Tian; Chiara Maffei; Gabriel Ramos-Llordén; Aapo Nummenmaa; Thomas Witzel; Anastasia Yendiki; Yi-Qiao Song; Chu-Chung Huang; Ching-Po Lin; Nikolaus Weiskopf; Alfred Anwander; Derek K Jones; Bruce R Rosen; Lawrence L Wald; Susie Y Huang
Journal:  Neuroimage       Date:  2022-02-23       Impact factor: 7.400

Review 3.  What's new and what's next in diffusion MRI preprocessing.

Authors:  Chantal M W Tax; Matteo Bastiani; Jelle Veraart; Eleftherios Garyfallidis; M Okan Irfanoglu
Journal:  Neuroimage       Date:  2021-12-26       Impact factor: 7.400

4.  Denoise Functional Magnetic Resonance Imaging With Random Matrix Theory Based Principal Component Analysis.

Authors:  Wei Zhu; Xiaodong Ma; Xiao-Hong Zhu; Kamil Ugurbil; Wei Chen; Xiaoping Wu
Journal:  IEEE Trans Biomed Eng       Date:  2022-10-19       Impact factor: 4.756

Review 5.  The Human Connectome Project: A retrospective.

Authors:  Jennifer Stine Elam; Matthew F Glasser; Michael P Harms; Stamatios N Sotiropoulos; Jesper L R Andersson; Gregory C Burgess; Sandra W Curtiss; Robert Oostenveld; Linda J Larson-Prior; Jan-Mathijs Schoffelen; Michael R Hodge; Eileen A Cler; Daniel M Marcus; Deanna M Barch; Essa Yacoub; Stephen M Smith; Kamil Ugurbil; David C Van Essen
Journal:  Neuroimage       Date:  2021-09-08       Impact factor: 7.400

6.  ULTRAHIGH FIELD and ULTRAHIGH RESOLUTION fMRI.

Authors:  Kamil Uğurbil
Journal:  Curr Opin Biomed Eng       Date:  2021-04-14

7.  Analysis on Characteristics of Magnetic Resonance Imaging Image under Low-Rank Matrix Denoising Algorithm in the Diagnosis of Cerebral Aneurysm.

Authors:  Jun Li; Jin Li; Qin Hu
Journal:  Comput Math Methods Med       Date:  2021-11-15       Impact factor: 2.238

8.  Low-Rank Matrix Denoising Algorithm-Based MRI Image Feature for Therapeutic Effect Evaluation of NCRT on Rectal Cancer.

Authors:  Qin Hu; Jin Li; Jun Li
Journal:  J Healthc Eng       Date:  2021-11-29       Impact factor: 2.682

9.  Denoising diffusion weighted imaging data using convolutional neural networks.

Authors:  Hu Cheng; Sophia Vinci-Booher; Jian Wang; Bradley Caron; Qiuting Wen; Sharlene Newman; Franco Pestilli
Journal:  PLoS One       Date:  2022-09-15       Impact factor: 3.752

10.  Ultra-high field (10.5T) diffusion-weighted MRI of the macaque brain.

Authors:  Mark D Grier; Essa Yacoub; Gregor Adriany; Russell L Lagore; Noam Harel; Ru-Yuan Zhang; Christophe Lenglet; Kâmil Uğurbil; Jan Zimmermann; Sarah R Heilbronner
Journal:  Neuroimage       Date:  2022-04-13       Impact factor: 7.400

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