Literature DB >> 33186556

The emergence of phase separation as an organizing principle in bacteria.

Christopher A Azaldegui1, Anthony G Vecchiarelli2, Julie S Biteen3.   

Abstract

Recent investigations in bacteria suggest that membraneless organelles play a crucial role in the subcellular organization of bacterial cells. However, the biochemical functions and assembly mechanisms of these compartments have not yet been completely characterized. This article assesses the current methodologies used in the study of membraneless organelles in bacteria, highlights the limitations in determining the phase of complexes in cells that are typically an order of magnitude smaller than a eukaryotic cell, and identifies gaps in our current knowledge about the functional role of membraneless organelles in bacteria. Liquid-liquid phase separation (LLPS) is one proposed mechanism for membraneless organelle assembly. Overall, we outline the framework to evaluate LLPS in vivo in bacteria, we describe the bacterial systems with proposed LLPS activity, and we comment on the general role LLPS plays in bacteria and how it may regulate cellular function. Lastly, we provide an outlook for super-resolution microscopy and single-molecule tracking as tools to assess condensates in bacteria.
Copyright © 2020 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 33186556      PMCID: PMC8059088          DOI: 10.1016/j.bpj.2020.09.023

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  129 in total

1.  Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa.

Authors:  Lisa R Racki; Elitza I Tocheva; Michael G Dieterle; Meaghan C Sullivan; Grant J Jensen; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  P1 plasmid segregation: accurate redistribution by dynamic plasmid pairing and separation.

Authors:  Manjistha Sengupta; Henrik Jorck Nielsen; Brenda Youngren; Stuart Austin
Journal:  J Bacteriol       Date:  2009-11-06       Impact factor: 3.490

3.  Angular reconstitution-based 3D reconstructions of nanomolecular structures from superresolution light-microscopy images.

Authors:  Desirée Salas; Antoine Le Gall; Jean-Bernard Fiche; Alessandro Valeri; Yonggang Ke; Patrick Bron; Gaetan Bellot; Marcelo Nollmann
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-15       Impact factor: 11.205

Review 4.  Phase-separated bacterial ribonucleoprotein bodies organize mRNA decay.

Authors:  Nisansala S Muthunayake; Dylan T Tomares; W Seth Childers; Jared M Schrader
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-05-23       Impact factor: 9.957

5.  Advances in Understanding Carboxysome Assembly in Prochlorococcus and Synechococcus Implicate CsoS2 as a Critical Component.

Authors:  Fei Cai; Zhicheng Dou; Susan L Bernstein; Ryan Leverenz; Eric B Williams; Sabine Heinhorst; Jessup Shively; Gordon C Cannon; Cheryl A Kerfeld
Journal:  Life (Basel)       Date:  2015-03-27

6.  Association of the Cold Shock DEAD-Box RNA Helicase RhlE to the RNA Degradosome in Caulobacter crescentus.

Authors:  Angel A Aguirre; Alexandre M Vicente; Steven W Hardwick; Daniela M Alvelos; Ricardo R Mazzon; Ben F Luisi; Marilis V Marques
Journal:  J Bacteriol       Date:  2017-06-13       Impact factor: 3.490

7.  Multivalent interactions between CsoS2 and Rubisco mediate α-carboxysome formation.

Authors:  Luke M Oltrogge; Thawatchai Chaijarasphong; Allen W Chen; Eric R Bolin; Susan Marqusee; David F Savage
Journal:  Nat Struct Mol Biol       Date:  2020-03-02       Impact factor: 15.369

Review 8.  Bacterial microcompartments: catalysis-enhancing metabolic modules for next generation metabolic and biomedical engineering.

Authors:  Henning Kirst; Cheryl A Kerfeld
Journal:  BMC Biol       Date:  2019-10-10       Impact factor: 7.431

Review 9.  Evidence for and against Liquid-Liquid Phase Separation in the Nucleus.

Authors:  Peng A; Stephanie C Weber
Journal:  Noncoding RNA       Date:  2019-11-01

Review 10.  P-Bodies: Composition, Properties, and Functions.

Authors:  Yang Luo; Zhenkun Na; Sarah A Slavoff
Journal:  Biochemistry       Date:  2018-01-30       Impact factor: 3.162

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  30 in total

1.  In vivo liquid-liquid phase separation protects amyloidogenic and aggregation-prone peptides during overexpression in Escherichia coli.

Authors:  Bartosz Gabryelczyk; Reema Alag; Margaret Philips; Kimberly Low; Anandalakshmi Venkatraman; Bhuvaneswari Kannaian; Xiangyan Shi; Markus Linder; Konstantin Pervushin; Ali Miserez
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

2.  Membraneless organelles formed by liquid-liquid phase separation increase bacterial fitness.

Authors:  Xin Jin; Ji-Eun Lee; Charley Schaefer; Xinwei Luo; Adam J M Wollman; Alex L Payne-Dwyer; Tian Tian; Xiaowei Zhang; Xiao Chen; Yingxing Li; Tom C B McLeish; Mark C Leake; Fan Bai
Journal:  Sci Adv       Date:  2021-10-20       Impact factor: 14.136

3.  Evolved interactions stabilize many coexisting phases in multicomponent liquids.

Authors:  David Zwicker; Liedewij Laan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-06       Impact factor: 12.779

Review 4.  Melatonin: Regulation of Viral Phase Separation and Epitranscriptomics in Post-Acute Sequelae of COVID-19.

Authors:  Doris Loh; Russel J Reiter
Journal:  Int J Mol Sci       Date:  2022-07-23       Impact factor: 6.208

5.  Faces, facets, and functions of biomolecular condensates driven by multivalent proteins and nucleic acids.

Authors:  Jason D Kahn; Edward A Lemke; Rohit V Pappu
Journal:  Biophys J       Date:  2021-03-16       Impact factor: 4.033

Review 6.  Combating deleterious phase transitions in neurodegenerative disease.

Authors:  April L Darling; James Shorter
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2021-02-05       Impact factor: 4.739

Review 7.  Positioning the Model Bacterial Organelle, the Carboxysome.

Authors:  Joshua S MacCready; Anthony G Vecchiarelli
Journal:  mBio       Date:  2021-05-11       Impact factor: 7.867

Review 8.  Roles of liquid-liquid phase separation in bacterial RNA metabolism.

Authors:  Vidhyadhar Nandana; Jared M Schrader
Journal:  Curr Opin Microbiol       Date:  2021-04-18       Impact factor: 7.584

Review 9.  Nanotechnological Applications Based on Bacterial Encapsulins.

Authors:  Javier M Rodríguez; Carolina Allende-Ballestero; Jeroen J L M Cornelissen; José R Castón
Journal:  Nanomaterials (Basel)       Date:  2021-06-01       Impact factor: 5.076

10.  Controlling biomolecular condensates via chemical reactions.

Authors:  Jan Kirschbaum; David Zwicker
Journal:  J R Soc Interface       Date:  2021-06-30       Impact factor: 4.118

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