Literature DB >> 33878678

Roles of liquid-liquid phase separation in bacterial RNA metabolism.

Vidhyadhar Nandana1, Jared M Schrader2.   

Abstract

While bacteria typically lack membrane bound organelles, the mechanisms of subcellular organization have been unclear. Bacteria have recently been found to harbor membraneless organelles containing enzymes of many biochemical pathways. These organelles, called biomolecular condensates, have been found to commonly form through the process of liquid-liquid phase separation and are typically enriched in nucleic acid binding proteins. Interestingly, eukaryote and bacterial transcription and RNA decay machinery have been found to form biomolecular condensates. Additionally, DEAD Box ATPases from eukaryotes and bacteria have also been found to modulate biomolecular condensates. The shared ability of RNA metabolic enzymes to assemble into biomolecular condensates across domains suggests that this mode of subcellular organization aids in the control of RNA metabolism.
Copyright © 2021 Elsevier Ltd. All rights reserved.

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Year:  2021        PMID: 33878678      PMCID: PMC8169629          DOI: 10.1016/j.mib.2021.03.005

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.584


  68 in total

1.  Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates.

Authors:  Hans Bremer; Patrick P Dennis
Journal:  EcoSal Plus       Date:  2008-09

2.  The distribution of RNA polymerase in Escherichia coli is dynamic and sensitive to environmental cues.

Authors:  Julio E Cabrera; Ding J Jin
Journal:  Mol Microbiol       Date:  2003-12       Impact factor: 3.501

3.  DEAD-box ATPases are global regulators of phase-separated organelles.

Authors:  Maria Hondele; Ruchika Sachdev; Stephanie Heinrich; Juan Wang; Pascal Vallotton; Beatriz M A Fontoura; Karsten Weis
Journal:  Nature       Date:  2019-08-21       Impact factor: 49.962

4.  Membrane recognition and dynamics of the RNA degradosome.

Authors:  Henrik Strahl; Catherine Turlan; Syma Khalid; Peter J Bond; Jean-Marie Kebalo; Pascale Peyron; Leonora Poljak; Marie Bouvier; Leendert Hamoen; Ben F Luisi; Agamemnon J Carpousis
Journal:  PLoS Genet       Date:  2015-02-03       Impact factor: 5.917

Review 5.  Phase separation in biology; functional organization of a higher order.

Authors:  Diana M Mitrea; Richard W Kriwacki
Journal:  Cell Commun Signal       Date:  2016-01-05       Impact factor: 5.712

6.  Condensation of Ded1p Promotes a Translational Switch from Housekeeping to Stress Protein Production.

Authors:  Christiane Iserman; Christine Desroches Altamirano; Ceciel Jegers; Ulrike Friedrich; Taraneh Zarin; Anatol W Fritsch; Matthäus Mittasch; Antonio Domingues; Lena Hersemann; Marcus Jahnel; Doris Richter; Ulf-Peter Guenther; Matthias W Hentze; Alan M Moses; Anthony A Hyman; Günter Kramer; Moritz Kreysing; Titus M Franzmann; Simon Alberti
Journal:  Cell       Date:  2020-04-30       Impact factor: 41.582

7.  Dynamic Membrane Localization of RNase Y in Bacillus subtilis.

Authors:  Lina Hamouche; Cyrille Billaudeau; Anna Rocca; Arnaud Chastanet; Saravuth Ngo; Soumaya Laalami; Harald Putzer
Journal:  mBio       Date:  2020-02-18       Impact factor: 7.867

8.  RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome.

Authors:  Briana Van Treeck; David S W Protter; Tyler Matheny; Anthony Khong; Christopher D Link; Roy Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

9.  Human mitochondrial RNA decay mediated by PNPase-hSuv3 complex takes place in distinct foci.

Authors:  Lukasz S Borowski; Andrzej Dziembowski; Monika S Hejnowicz; Piotr P Stepien; Roman J Szczesny
Journal:  Nucleic Acids Res       Date:  2012-12-05       Impact factor: 16.971

10.  Pat1 promotes processing body assembly by enhancing the phase separation of the DEAD-box ATPase Dhh1 and RNA.

Authors:  Ruchika Sachdev; Maria Hondele; Miriam Linsenmeier; Pascal Vallotton; Christopher F Mugler; Paolo Arosio; Karsten Weis
Journal:  Elife       Date:  2019-01-16       Impact factor: 8.140

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  5 in total

1.  Probing Liquid-Liquid Phase Separation of RNA-Binding Proteins In Vitro and In Vivo.

Authors:  Stephanie Heinrich; Maria Hondele
Journal:  Methods Mol Biol       Date:  2022

2.  The bacterial protein Hfq: Stable modifications and growth phase-dependent changes in SPAM profiles.

Authors:  Stanley F Troung; Maxim V Sukhodolets
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2021-09-30       Impact factor: 3.318

Review 3.  Stress-Induced Membraneless Organelles in Eukaryotes and Prokaryotes: Bird's-Eye View.

Authors:  Anna S Fefilova; Alexander V Fonin; Innokentii E Vishnyakov; Irina M Kuznetsova; Konstantin K Turoverov
Journal:  Int J Mol Sci       Date:  2022-04-30       Impact factor: 6.208

Review 4.  Bacterial Transcriptional Regulators: A Road Map for Functional, Structural, and Biophysical Characterization.

Authors:  Cristian M Pis Diez; Maria Juliana Juncos; Matias Villarruel Dujovne; Daiana A Capdevila
Journal:  Int J Mol Sci       Date:  2022-02-16       Impact factor: 5.923

Review 5.  Using quantitative reconstitution to investigate multicomponent condensates.

Authors:  Simon L Currie; Michael K Rosen
Journal:  RNA       Date:  2021-11-12       Impact factor: 4.942

  5 in total

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