Literature DB >> 33176294

Classification of 12-lead ECGs: the PhysioNet/Computing in Cardiology Challenge 2020.

Erick A Perez Alday1, Annie Gu1, Amit J Shah2, Chad Robichaux1, An-Kwok Ian Wong3, Chengyu Liu4, Feifei Liu5, Ali Bahrami Rad1, Andoni Elola1,6, Salman Seyedi1, Qiao Li1, Ashish Sharma1, Gari D Clifford1,7,8, Matthew A Reyna1,8.   

Abstract

OBJECTIVE: Vast 12-lead ECGs repositories provide opportunities to develop new machine learning approaches for creating accurate and automatic diagnostic systems for cardiac abnormalities. However, most 12-lead ECG classification studies are trained, tested, or developed in single, small, or relatively homogeneous datasets. In addition, most algorithms focus on identifying small numbers of cardiac arrhythmias that do not represent the complexity and difficulty of ECG interpretation. This work addresses these issues by providing a standard, multi-institutional database and a novel scoring metric through a public competition: the PhysioNet/Computing in Cardiology Challenge 2020. APPROACH: A total of 66 361 12-lead ECG recordings were sourced from six hospital systems from four countries across three continents; 43 101 recordings were posted publicly with a focus on 27 diagnoses. For the first time in a public competition, we required teams to publish open-source code for both training and testing their algorithms, ensuring full scientific reproducibility. MAIN
RESULTS: A total of 217 teams submitted 1395 algorithms during the Challenge, representing a diversity of approaches for identifying cardiac abnormalities from both academia and industry. As with previous Challenges, high-performing algorithms exhibited significant drops ([Formula: see text]10%) in performance on the hidden test data. SIGNIFICANCE: Data from diverse institutions allowed us to assess algorithmic generalizability. A novel evaluation metric considered different misclassification errors for different cardiac abnormalities, capturing the outcomes and risks of different diagnoses. Requiring both trained models and code for training models improved the generalizability of submissions, setting a new bar in reproducibility for public data science competitions.

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Mesh:

Year:  2021        PMID: 33176294      PMCID: PMC8015789          DOI: 10.1088/1361-6579/abc960

Source DB:  PubMed          Journal:  Physiol Meas        ISSN: 0967-3334            Impact factor:   2.833


  17 in total

1.  Importance of the heart vector origin point definition for an ECG analysis: The Atherosclerosis Risk in Communities (ARIC) study.

Authors:  Erick Andres Perez-Alday; Yin Li-Pershing; Aron Bender; Christopher Hamilton; Jason A Thomas; Kyle Johnson; Tiffany L Lee; Ryan Gonzales; Aaron Li; Kelley Newton; Larisa G Tereshchenko
Journal:  Comput Biol Med       Date:  2018-11-17       Impact factor: 4.589

2.  Heart Disease and Stroke Statistics-2019 Update: A Report From the American Heart Association.

Authors:  Emelia J Benjamin; Paul Muntner; Alvaro Alonso; Marcio S Bittencourt; Clifton W Callaway; April P Carson; Alanna M Chamberlain; Alexander R Chang; Susan Cheng; Sandeep R Das; Francesca N Delling; Luc Djousse; Mitchell S V Elkind; Jane F Ferguson; Myriam Fornage; Lori Chaffin Jordan; Sadiya S Khan; Brett M Kissela; Kristen L Knutson; Tak W Kwan; Daniel T Lackland; Tené T Lewis; Judith H Lichtman; Chris T Longenecker; Matthew Shane Loop; Pamela L Lutsey; Seth S Martin; Kunihiro Matsushita; Andrew E Moran; Michael E Mussolino; Martin O'Flaherty; Ambarish Pandey; Amanda M Perak; Wayne D Rosamond; Gregory A Roth; Uchechukwu K A Sampson; Gary M Satou; Emily B Schroeder; Svati H Shah; Nicole L Spartano; Andrew Stokes; David L Tirschwell; Connie W Tsao; Mintu P Turakhia; Lisa B VanWagner; John T Wilkins; Sally S Wong; Salim S Virani
Journal:  Circulation       Date:  2019-03-05       Impact factor: 29.690

3.  An open source benchmarked toolbox for cardiovascular waveform and interval analysis.

Authors:  Adriana N Vest; Giulia Da Poian; Qiao Li; Chengyu Liu; Shamim Nemati; Amit J Shah; Gari D Clifford
Journal:  Physiol Meas       Date:  2018-10-11       Impact factor: 2.833

4.  A real-time QRS detection algorithm.

Authors:  J Pan; W J Tompkins
Journal:  IEEE Trans Biomed Eng       Date:  1985-03       Impact factor: 4.538

5.  Global Electric Heterogeneity Risk Score for Prediction of Sudden Cardiac Death in the General Population: The Atherosclerosis Risk in Communities (ARIC) and Cardiovascular Health (CHS) Studies.

Authors:  Jonathan W Waks; Colleen M Sitlani; Elsayed Z Soliman; Muammar Kabir; Elyar Ghafoori; Mary L Biggs; Charles A Henrikson; Nona Sotoodehnia; Tor Biering-Sørensen; Sunil K Agarwal; David S Siscovick; Wendy S Post; Scott D Solomon; Alfred E Buxton; Mark E Josephson; Larisa G Tereshchenko
Journal:  Circulation       Date:  2016-04-14       Impact factor: 29.690

6.  PTB-XL, a large publicly available electrocardiography dataset.

Authors:  Patrick Wagner; Nils Strodthoff; Ralf-Dieter Bousseljot; Dieter Kreiseler; Fatima I Lunze; Wojciech Samek; Tobias Schaeffter
Journal:  Sci Data       Date:  2020-05-25       Impact factor: 6.444

7.  QT prolongation predicts short-term mortality independent of comorbidity.

Authors:  Charlotte Gibbs; Jacob Thalamus; Doris Tove Kristoffersen; Martin Veel Svendsen; Øystein L Holla; Kristian Heldal; Kristina H Haugaa; Jan Hysing
Journal:  Europace       Date:  2019-08-01       Impact factor: 5.214

8.  Author Correction: Automatic diagnosis of the 12-lead ECG using a deep neural network.

Authors:  Antônio H Ribeiro; Manoel Horta Ribeiro; Gabriela M M Paixão; Derick M Oliveira; Paulo R Gomes; Jéssica A Canazart; Milton P S Ferreira; Carl R Andersson; Peter W Macfarlane; Wagner Meira; Thomas B Schön; Antonio Luiz P Ribeiro
Journal:  Nat Commun       Date:  2020-05-01       Impact factor: 14.919

9.  Early Prediction of Sepsis From Clinical Data: The PhysioNet/Computing in Cardiology Challenge 2019.

Authors:  Matthew A Reyna; Christopher S Josef; Russell Jeter; Supreeth P Shashikumar; M Brandon Westover; Shamim Nemati; Gari D Clifford; Ashish Sharma
Journal:  Crit Care Med       Date:  2020-02       Impact factor: 7.598

10.  Detection and Classification of Cardiac Arrhythmias by a Challenge-Best Deep Learning Neural Network Model.

Authors:  Tsai-Min Chen; Chih-Han Huang; Edward S C Shih; Yu-Feng Hu; Ming-Jing Hwang
Journal:  iScience       Date:  2020-02-04
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  15 in total

1.  Optimal ECG-lead selection increases generalizability of deep learning on ECG abnormality classification.

Authors:  Changxin Lai; Shijie Zhou; Natalia A Trayanova
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2021-10-25       Impact factor: 4.226

2.  Issues in the automated classification of multilead ecgs using heterogeneous labels and populations.

Authors:  Matthew A Reyna; Nadi Sadr; Erick A Perez Alday; Annie Gu; Amit J Shah; Chad Robichaux; Ali Bahrami Rad; Andoni Elola; Salman Seyedi; Sardar Ansari; Hamid Ghanbari; Qiao Li; Ashish Sharma; Gari D Clifford
Journal:  Physiol Meas       Date:  2022-08-26       Impact factor: 2.688

3.  Transfer learning enables prediction of myocardial injury from continuous single-lead electrocardiography.

Authors:  Boyang Tom Jin; Raj Palleti; Siyu Shi; Andrew Y Ng; James V Quinn; Pranav Rajpurkar; David Kim
Journal:  J Am Med Inform Assoc       Date:  2022-10-07       Impact factor: 7.942

4.  Body Surface Potential Mapping: Contemporary Applications and Future Perspectives.

Authors:  Jake Bergquist; Lindsay Rupp; Brian Zenger; James Brundage; Anna Busatto; Rob S MacLeod
Journal:  Hearts (Basel)       Date:  2021-11-05

5.  An Intelligent ECG-Based Tool for Diagnosing COVID-19 via Ensemble Deep Learning Techniques.

Authors:  Omneya Attallah
Journal:  Biosensors (Basel)       Date:  2022-05-05

6.  A large-scale multi-label 12-lead electrocardiogram database with standardized diagnostic statements.

Authors:  Hui Liu; Dan Chen; Da Chen; Xiyu Zhang; Huijie Li; Lipan Bian; Minglei Shu; Yinglong Wang
Journal:  Sci Data       Date:  2022-06-07       Impact factor: 8.501

7.  Automatic Multi-Label ECG Classification with Category Imbalance and Cost-Sensitive Thresholding.

Authors:  Yang Liu; Qince Li; Kuanquan Wang; Jun Liu; Runnan He; Yongfeng Yuan; Henggui Zhang
Journal:  Biosensors (Basel)       Date:  2021-11-14

8.  Practical Lessons on 12-Lead ECG Classification: Meta-Analysis of Methods From PhysioNet/Computing in Cardiology Challenge 2020.

Authors:  Shenda Hong; Wenrui Zhang; Chenxi Sun; Yuxi Zhou; Hongyan Li
Journal:  Front Physiol       Date:  2022-01-14       Impact factor: 4.566

9.  Convolutional neural network for classification of eight types of arrhythmia using 2D time-frequency feature map from standard 12-lead electrocardiogram.

Authors:  Da Un Jeong; Ki Moo Lim
Journal:  Sci Rep       Date:  2021-10-14       Impact factor: 4.379

10.  Recurrence Plot-Based Approach for Cardiac Arrhythmia Classification Using Inception-ResNet-v2.

Authors:  Hua Zhang; Chengyu Liu; Zhimin Zhang; Yujie Xing; Xinwen Liu; Ruiqing Dong; Yu He; Ling Xia; Feng Liu
Journal:  Front Physiol       Date:  2021-05-17       Impact factor: 4.566

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