Literature DB >> 33166737

Genome organization: Tag it, move it, place it.

Audrey Yi Tyan Peng1, Janhavi A Kolhe1, Lindsey D Behrens1, Brian C Freeman2.   

Abstract

Chromosomes are selectively organized within the nuclei of interphase cells reflecting the current fate of each cell and are reorganized in response to various physiological cues to maintain homeostasis. Although substantial progress is being made to establish the various patterns of genome architecture, less is understood on how chromosome folding/positioning is achieved. Here, we discuss recent insights into the cellular mechanisms dictating chromatin movements including the use of epigenetic modifications and allosterically regulated transcription factors, as well as a nucleoskeleton system comprised of actin, myosin, and actin-binding proteins. Together, these nuclear factors help coordinate the positioning of both general and cell-specific genomic architectural features. Published by Elsevier Ltd.

Entities:  

Keywords:  Chromatin remodelers; Chromosome organization; Molecular chaperones; Nuclear actin; Nucleoskeleton

Mesh:

Substances:

Year:  2020        PMID: 33166737      PMCID: PMC7925342          DOI: 10.1016/j.ceb.2020.10.005

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  53 in total

1.  Long-range directional movement of an interphase chromosome site.

Authors:  Chien-Hui Chuang; Anne E Carpenter; Beata Fuchsova; Terezina Johnson; Primal de Lanerolle; Andrew S Belmont
Journal:  Curr Biol       Date:  2006-04-18       Impact factor: 10.834

Review 2.  Chapter 5. Nuclear actin-related proteins in epigenetic control.

Authors:  Richard B Meagher; Muthugapatti K Kandasamy; Elizabeth C McKinney; Eileen Roy
Journal:  Int Rev Cell Mol Biol       Date:  2009       Impact factor: 6.813

Review 3.  Nuclear actin dynamics in gene expression and genome organization.

Authors:  Salla Kyheröinen; Maria K Vartiainen
Journal:  Semin Cell Dev Biol       Date:  2019-11-15       Impact factor: 7.727

Review 4.  Mechanisms and Functions of Chromosome Compartmentalization.

Authors:  Erica M Hildebrand; Job Dekker
Journal:  Trends Biochem Sci       Date:  2020-02-18       Impact factor: 13.807

5.  Multiple actin-related proteins of Saccharomyces cerevisiae are present in the nucleus.

Authors:  M Harata; Y Oma; T Tabuchi; Y Zhang; D J Stillman; S Mizuno
Journal:  J Biochem       Date:  2000-10       Impact factor: 3.387

6.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

7.  Vertebrate Arp6, a novel nuclear actin-related protein, interacts with heterochromatin protein 1.

Authors:  Eri Ohfuchi; Megumi Kato; Mitsuho Sasaki; Kenji Sugimoto; Yukako Oma; Masahiko Harata
Journal:  Eur J Cell Biol       Date:  2006-02-17       Impact factor: 4.492

8.  Nuclear actin network assembly by formins regulates the SRF coactivator MAL.

Authors:  Christian Baarlink; Haicui Wang; Robert Grosse
Journal:  Science       Date:  2013-04-04       Impact factor: 47.728

9.  Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.

Authors:  Bogdan Bintu; Leslie J Mateo; Jun-Han Su; Nicholas A Sinnott-Armstrong; Mirae Parker; Seon Kinrot; Kei Yamaya; Alistair N Boettiger; Xiaowei Zhuang
Journal:  Science       Date:  2018-10-26       Impact factor: 47.728

10.  Mechanism of Long-Range Chromosome Motion Triggered by Gene Activation.

Authors:  Anqi Wang; Janhavi A Kolhe; Nate Gioacchini; Imke Baade; William M Brieher; Craig L Peterson; Brian C Freeman
Journal:  Dev Cell       Date:  2020-01-02       Impact factor: 12.270

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  2 in total

1.  Editorial: Architectural cell elements as multimodal sensors, transducers, and actuators.

Authors:  Pierre A Coulombe; Pekka Lappalainen
Journal:  Curr Opin Cell Biol       Date:  2021-01-06       Impact factor: 8.386

2.  Genome Organization and Dynamics Specialty Grand Challenge.

Authors:  Brian Christopher Freeman
Journal:  Front Mol Biosci       Date:  2021-12-31
  2 in total

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