Literature DB >> 33145846

Population genomics for wildlife conservation and management.

Paul A Hohenlohe1, W Chris Funk2, Om P Rajora3.   

Abstract

Biodiversity is under threat worldwide. Over the past decade, the field of population genomics has developed across nonmodel organisms, and the results of this research have begun to be applied in conservation and management of wildlife species. Genomics tools can provide precise estimates of basic features of wildlife populations, such as effective population size, inbreeding, demographic history and population structure, that are critical for conservation efforts. Moreover, population genomics studies can identify particular genetic loci and variants responsible for inbreeding depression or adaptation to changing environments, allowing for conservation efforts to estimate the capacity of populations to evolve and adapt in response to environmental change and to manage for adaptive variation. While connections from basic research to applied wildlife conservation have been slow to develop, these connections are increasingly strengthening. Here we review the primary areas in which population genomics approaches can be applied to wildlife conservation and management, highlight examples of how they have been used, and provide recommendations for building on the progress that has been made in this field.
© 2020 The Authors. Molecular Ecology published by 2020 John Wiley & Sons Ltd.

Entities:  

Keywords:  adaptive capacity; conservation units; effective population size; genetic rescue; inbreeding depression; population connectivity

Mesh:

Year:  2020        PMID: 33145846      PMCID: PMC7894518          DOI: 10.1111/mec.15720

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  129 in total

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Authors:  Michael C Whitlock; Katie E Lotterhos
Journal:  Am Nat       Date:  2015-09-15       Impact factor: 3.926

2.  Conserving adaptive potential: lessons from Tasmanian devils and their transmissible cancer.

Authors:  Paul A Hohenlohe; Hamish I McCallum; Menna E Jones; Matthew F Lawrance; Rodrigo K Hamede; Andrew Storfer
Journal:  Conserv Genet       Date:  2019-02-14       Impact factor: 2.538

3.  Bayesian inference of selection in a heterogeneous environment from genetic time-series data.

Authors:  Zachariah Gompert
Journal:  Mol Ecol       Date:  2015-09-10       Impact factor: 6.185

4.  Anthropogenic habitat alteration leads to rapid loss of adaptive variation and restoration potential in wild salmon populations.

Authors:  Tasha Q Thompson; M Renee Bellinger; Sean M O'Rourke; Daniel J Prince; Alexander E Stevenson; Antonia T Rodrigues; Matthew R Sloat; Camilla F Speller; Dongya Y Yang; Virginia L Butler; Michael A Banks; Michael R Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-04       Impact factor: 11.205

5.  Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences.

Authors:  Marty Kardos; Anna Qvarnström; Hans Ellegren
Journal:  Genetics       Date:  2017-01-18       Impact factor: 4.562

6.  Inferring responses to climate dynamics from historical demography in neotropical forest lizards.

Authors:  Ivan Prates; Alexander T Xue; Jason L Brown; Diego F Alvarado-Serrano; Miguel T Rodrigues; Michael J Hickerson; Ana C Carnaval
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

7.  Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer.

Authors:  Mark J Margres; Menna E Jones; Brendan Epstein; Douglas H Kerlin; Sebastien Comte; Samantha Fox; Alexandra K Fraik; Sarah A Hendricks; Stewart Huxtable; Shelly Lachish; Billie Lazenby; Sean M O'Rourke; Amanda R Stahlke; Cody G Wiench; Rodrigo Hamede; Barbara Schönfeld; Hamish McCallum; Michael R Miller; Paul A Hohenlohe; Andrew Storfer
Journal:  Mol Ecol       Date:  2018-10-05       Impact factor: 6.185

8.  Genomic consequences of genetic rescue in an insular population of bighorn sheep (Ovis canadensis).

Authors:  J M Miller; J Poissant; J T Hogg; D W Coltman
Journal:  Mol Ecol       Date:  2012-01-18       Impact factor: 6.185

9.  Genomic data detect corresponding signatures of population size change on an ecological time scale in two salamander species.

Authors:  Schyler O Nunziata; Stacey L Lance; David E Scott; Emily Moriarty Lemmon; David W Weisrock
Journal:  Mol Ecol       Date:  2017-01-21       Impact factor: 6.185

10.  Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas.

Authors:  Tom van der Valk; David Díez-Del-Molino; Tomas Marques-Bonet; Katerina Guschanski; Love Dalén
Journal:  Curr Biol       Date:  2018-12-27       Impact factor: 10.834

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  43 in total

1.  A strategic sampling design revealed the local genetic structure of cold-water fluvial sculpin: a focus on groundwater-dependent water temperature heterogeneity.

Authors:  Souta Nakajima; Masanao Sueyoshi; Shun K Hirota; Nobuo Ishiyama; Ayumi Matsuo; Yoshihisa Suyama; Futoshi Nakamura
Journal:  Heredity (Edinb)       Date:  2021-08-20       Impact factor: 3.832

2.  Genomic insights into the genotype-environment mismatch and conservation units of a Qinghai-Tibet Plateau endemic cypress under climate change.

Authors:  Heng Yang; Jialiang Li; Richard Ian Milne; Wenjing Tao; Yi Wang; Jibin Miao; Wentao Wang; Tsam Ju; Sonam Tso; Jian Luo; Kangshan Mao
Journal:  Evol Appl       Date:  2022-06-10       Impact factor: 4.929

3.  Population structure, genomic diversity and demographic history of Komodo dragons inferred from whole-genome sequencing.

Authors:  Alessio Iannucci; Andrea Benazzo; Chiara Natali; Evy Ayu Arida; Moch Samsul Arifin Zein; Tim S Jessop; Giorgio Bertorelle; Claudio Ciofi
Journal:  Mol Ecol       Date:  2021-08-30       Impact factor: 6.622

4.  Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations.

Authors:  Glenn Yannic; Thomas Broquet; Emeline Charbonnel; Claire Daguin-Thiébaut; Lucille Caradec; Eléonore Moittié; Olivier Gilg; Maria V Gavrilo; Hallvard Strøm; Mark L Mallory; R I Guy Morrison; H Grant Gilchrist; Raphael Leblois; Camille Roux; Jonathan M Yearsley
Journal:  Heredity (Edinb)       Date:  2022-03-05       Impact factor: 3.832

5.  Urban ecosystem drives genetic diversity in feral honey bee.

Authors:  Aleksandra Patenković; Marija Tanasković; Pavle Erić; Katarina Erić; Milica Mihajlović; Ljubiša Stanisavljević; Slobodan Davidović
Journal:  Sci Rep       Date:  2022-10-21       Impact factor: 4.996

6.  Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern.

Authors:  Jana Wold; Klaus-Peter Koepfli; Stephanie J Galla; David Eccles; Carolyn J Hogg; Marissa F Le Lec; Joseph Guhlin; Anna W Santure; Tammy E Steeves
Journal:  Mol Ecol       Date:  2021-09-12       Impact factor: 6.622

7.  Discovery of a wild, genetically pure Chinese giant salamander creates new conservation opportunities.

Authors:  Jing Chai; Chen-Qi Lu; Mu-Rong Yi; Nian-Hua Dai; Xiao-Dong Weng; Ming-Xiao Di; Yong Peng; Yong Tang; Qing-Hua Shan; Kai Wang; Huan-Zhang Liu; Hai-Peng Zhao; Jie-Qiong Jin; Ru-Jun Cao; Ping Lu; Lai-Chun Luo; Robert W Murphy; Ya-Ping Zhang; Jing Che
Journal:  Zool Res       Date:  2022-05-18

8.  Conservation genetics as a management tool: The five best-supported paradigms to assist the management of threatened species.

Authors:  Yvonne Willi; Torsten N Kristensen; Carla M Sgrò; Andrew R Weeks; Michael Ørsted; Ary A Hoffmann
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-04       Impact factor: 12.779

9.  Whole genome sequencing reveals high differentiation, low levels of genetic diversity and short runs of homozygosity among Swedish wels catfish.

Authors:  Axel Jensen; Mette Lillie; Kristofer Bergström; Per Larsson; Jacob Höglund
Journal:  Heredity (Edinb)       Date:  2021-05-07       Impact factor: 3.821

Review 10.  Population genomics for wildlife conservation and management.

Authors:  Paul A Hohenlohe; W Chris Funk; Om P Rajora
Journal:  Mol Ecol       Date:  2020-11-18       Impact factor: 6.185

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