Literature DB >> 35246618

Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations.

Glenn Yannic1,2, Thomas Broquet3, Emeline Charbonnel4,5, Claire Daguin-Thiébaut3, Lucille Caradec3, Eléonore Moittié3, Olivier Gilg5,6, Maria V Gavrilo7, Hallvard Strøm8, Mark L Mallory9, R I Guy Morrison10, H Grant Gilchrist10,11, Raphael Leblois12, Camille Roux13, Jonathan M Yearsley14.   

Abstract

Genetic data are useful for detecting sudden population declines in species that are difficult to study in the field. Yet this indirect approach has its own drawbacks, including population structure, mutation patterns, and generation overlap. The ivory gull (Pagophila eburnea), a long-lived Arctic seabird, is currently suffering from rapid alteration of its primary habitat (i.e., sea ice), and dramatic climatic events affecting reproduction and recruitment. However, ivory gulls live in remote areas, and it is difficult to assess the population trend of the species across its distribution. Here we present complementary microsatellite- and SNP-based genetic analyses to test a recent bottleneck genetic signal in ivory gulls over a large portion of their distribution. With attention to the potential effects of population structure, mutation patterns, and sample size, we found no significant signatures of population decline worldwide. At a finer scale, we found a significant bottleneck signal at one location in Canada. These results were compared with predictions from simulations showing how generation time and generation overlap can delay and reduce the bottleneck microsatellite heterozygosity excess signal. The consistency of the results obtained with independent methods strongly indicates that the species shows no genetic evidence of an overall decline in population size. However, drawing conclusions related to the species' population trends will require a better understanding of the effect of age structure in long-lived species. In addition, estimates of the effective global population size of ivory gulls were surprisingly low (~1000 ind.), suggesting that the evolutionary potential of the species is not assured.
© 2022. The Author(s), under exclusive licence to The Genetics Society.

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Mesh:

Year:  2022        PMID: 35246618      PMCID: PMC9076905          DOI: 10.1038/s41437-022-00515-3

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.832


  61 in total

1.  The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes.

Authors:  Lounès Chikhi; Vitor C Sousa; Pierre Luisi; Benoit Goossens; Mark A Beaumont
Journal:  Genetics       Date:  2010-08-25       Impact factor: 4.562

2.  Nemo: an evolutionary and population genetics programming framework.

Authors:  Frédéric Guillaume; Jacques Rougemont
Journal:  Bioinformatics       Date:  2006-07-31       Impact factor: 6.937

3.  Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data.

Authors:  J M Cornuet; G Luikart
Journal:  Genetics       Date:  1996-12       Impact factor: 4.562

4.  Consequences of a demographic bottleneck on genetic structure and variation in the Scandinavian brown bear.

Authors:  G Xenikoudakis; E Ersmark; J-L Tison; L Waits; J Kindberg; J E Swenson; L Dalén
Journal:  Mol Ecol       Date:  2015-06-04       Impact factor: 6.185

5.  Effective size of populations with overlapping generations.

Authors:  W G Hill
Journal:  Theor Popul Biol       Date:  1972-09       Impact factor: 1.570

6.  Inbreeding and variance effective numbers in populations with overlapping generations.

Authors:  J Felsenstein
Journal:  Genetics       Date:  1971-08       Impact factor: 4.562

7.  Mutational processes of simple-sequence repeat loci in human populations.

Authors:  A Di Rienzo; A C Peterson; J C Garza; A M Valdes; M Slatkin; N B Freimer
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

8.  Living on the edge of a shrinking habitat: the ivory gull, Pagophila eburnea, an endangered sea-ice specialist.

Authors:  Olivier Gilg; Larysa Istomina; Georg Heygster; Hallvard Strøm; Maria V Gavrilo; Mark L Mallory; Grant Gilchrist; Adrian Aebischer; Brigitte Sabard; Marcus Huntemann; Anders Mosbech; Glenn Yannic
Journal:  Biol Lett       Date:  2016-11       Impact factor: 3.703

9.  Circumpolar contamination in eggs of the high-Arctic ivory gull Pagophila eburnea.

Authors:  Magali Lucia; Nanette Verboven; Hallvard Strøm; Cecilie Miljeteig; Maria V Gavrilo; Birgit M Braune; David Boertmann; Geir W Gabrielsen
Journal:  Environ Toxicol Chem       Date:  2015-05-05       Impact factor: 3.742

10.  Estimating effective population size using RADseq: Effects of SNP selection and sample size.

Authors:  Florianne Marandel; Grégory Charrier; Jean-Baptiste Lamy; Sabrina Le Cam; Pascal Lorance; Verena M Trenkel
Journal:  Ecol Evol       Date:  2020-02-11       Impact factor: 2.912

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