Literature DB >> 33125055

Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations.

Belinda M Giardine1, Philippe Joly2,3, Serge Pissard4, Henri Wajcman5, David H K Chui6, Ross C Hardison1,7, George P Patrinos8,9,10,11.   

Abstract

HbVar (http://globin.bx.psu.edu/hbvar) is a widely-used locus-specific database (LSDB) launched 20 years ago by a multi-center academic effort to provide timely information on the numerous genomic variants leading to hemoglobin variants and all types of thalassemia and hemoglobinopathies. Here, we report several advances for the database. We made clinically relevant updates of HbVar, implemented as additional querying options in the HbVar query page, allowing the user to explore the clinical phenotype of compound heterozygous patients. We also made significant improvements to the HbVar front page, making comparative data querying, analysis and output more user-friendly. We continued to expand and enrich the regular data content, involving 1820 variants, 230 of which are new entries. We also increased the querying potential and expanded the usefulness of HbVar database in the clinical setting. These several additions, expansions and updates should improve the utility of HbVar both for the globin research community and in a clinical setting.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2021        PMID: 33125055      PMCID: PMC7778921          DOI: 10.1093/nar/gkaa959

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   19.160


  13 in total

1.  HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server.

Authors:  Ross C Hardison; David H K Chui; Belinda Giardine; Cathy Riemer; George P Patrinos; Nicholas Anagnou; Webb Miller; Henri Wajcman
Journal:  Hum Mutat       Date:  2002-03       Impact factor: 4.878

2.  Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.

Authors:  George P Patrinos; Belinda Giardine; Cathy Riemer; Webb Miller; David H K Chui; Nicholas P Anagnou; Henri Wajcman; Ross C Hardison
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain.

Authors:  George P Patrinos; David N Cooper; Erik van Mulligen; Vassiliki Gkantouna; Giannis Tzimas; Zuotian Tatum; Erik Schultes; Marco Roos; Barend Mons
Journal:  Hum Mutat       Date:  2012-07-23       Impact factor: 4.878

4.  Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach.

Authors:  Belinda Giardine; Joseph Borg; Douglas R Higgs; Kenneth R Peterson; Sjaak Philipsen; Donna Maglott; Belinda K Singleton; David J Anstee; A Nazli Basak; Barnaby Clark; Flavia C Costa; Paula Faustino; Halyna Fedosyuk; Alex E Felice; Alain Francina; Renzo Galanello; Monica V E Gallivan; Marianthi Georgitsi; Richard J Gibbons; Piero C Giordano; Cornelis L Harteveld; James D Hoyer; Martin Jarvis; Philippe Joly; Emmanuel Kanavakis; Panagoula Kollia; Stephan Menzel; Webb Miller; Kamran Moradkhani; John Old; Adamantia Papachatzopoulou; Manoussos N Papadakis; Petros Papadopoulos; Sonja Pavlovic; Lucia Perseu; Milena Radmilovic; Cathy Riemer; Stefania Satta; Iris Schrijver; Maja Stojiljkovic; Swee Lay Thein; Jan Traeger-Synodinos; Ray Tully; Takahito Wada; John S Waye; Claudia Wiemann; Branka Zukic; David H K Chui; Henri Wajcman; Ross C Hardison; George P Patrinos
Journal:  Nat Genet       Date:  2011-03-20       Impact factor: 38.330

5.  Documentation of clinically relevant genomic biomarker allele frequencies in the next-generation FINDbase worldwide database.

Authors:  Fotios Kounelis; Alexandros Kanterakis; Andreas Kanavos; Maria-Theodora Pandi; Zoe Kordou; Olivia Manusama; Gerasimos Vonitsanos; Theodora Katsila; Evangelia-Eirini Tsermpini; Volker M Lauschke; Maria Koromina; Peter J van der Spek; George P Patrinos
Journal:  Hum Mutat       Date:  2020-04-14       Impact factor: 4.878

6.  Database resources of the National Center for Biotechnology Information.

Authors:  Eric W Sayers; Jeff Beck; J Rodney Brister; Evan E Bolton; Kathi Canese; Donald C Comeau; Kathryn Funk; Anne Ketter; Sunghwan Kim; Avi Kimchi; Paul A Kitts; Anatoliy Kuznetsov; Stacy Lathrop; Zhiyong Lu; Kelly McGarvey; Thomas L Madden; Terence D Murphy; Nuala O'Leary; Lon Phan; Valerie A Schneider; Françoise Thibaud-Nissen; Bart W Trawick; Kim D Pruitt; James Ostell
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

7.  LOVD v.2.0: the next generation in gene variant databases.

Authors:  Ivo F A C Fokkema; Peter E M Taschner; Gerard C P Schaafsma; J Celli; Jeroen F J Laros; Johan T den Dunnen
Journal:  Hum Mutat       Date:  2011-02-22       Impact factor: 4.878

Review 8.  The Human Gene Mutation Database (HGMD®): optimizing its use in a clinical diagnostic or research setting.

Authors:  Peter D Stenson; Matthew Mort; Edward V Ball; Molly Chapman; Katy Evans; Luisa Azevedo; Matthew Hayden; Sally Heywood; David S Millar; Andrew D Phillips; David N Cooper
Journal:  Hum Genet       Date:  2020-06-28       Impact factor: 4.132

9.  UCSC Genome Browser enters 20th year.

Authors:  Christopher M Lee; Galt P Barber; Jonathan Casper; Hiram Clawson; Mark Diekhans; Jairo Navarro Gonzalez; Angie S Hinrichs; Brian T Lee; Luis R Nassar; Conner C Powell; Brian J Raney; Kate R Rosenbloom; Daniel Schmelter; Matthew L Speir; Ann S Zweig; David Haussler; Maximilian Haeussler; Robert M Kuhn; W James Kent
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

10.  Defining the disease liability of variants in the cystic fibrosis transmembrane conductance regulator gene.

Authors:  Patrick R Sosnay; Karen R Siklosi; Fredrick Van Goor; Kyle Kaniecki; Haihui Yu; Neeraj Sharma; Anabela S Ramalho; Margarida D Amaral; Ruslan Dorfman; Julian Zielenski; David L Masica; Rachel Karchin; Linda Millen; Philip J Thomas; George P Patrinos; Mary Corey; Michelle H Lewis; Johanna M Rommens; Carlo Castellani; Christopher M Penland; Garry R Cutting
Journal:  Nat Genet       Date:  2013-08-25       Impact factor: 38.330

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  6 in total

1.  Strategies to improve pharmacogenomic-guided treatment options for patients with β-hemoglobinopathies.

Authors:  George P Patrinos; David H K Chui; Ross C Hardison; Martin H Steinberg
Journal:  Expert Rev Hematol       Date:  2021-09-08       Impact factor: 2.819

2.  High-Throughput Variant Detection Using a Color-Mixing Strategy.

Authors:  Nina G Xie; Kerou Zhang; Ping Song; Renqiang Li; Junfeng Luo; David Y Zhang
Journal:  J Mol Diagn       Date:  2022-06-16       Impact factor: 5.341

3.  Innate Variability in Physiological and Omics Aspects of the Beta Thalassemia Trait-Specific Donor Variation Effects.

Authors:  Alkmini T Anastasiadi; Vassilis L Tzounakas; Monika Dzieciatkowska; Vasiliki-Zoi Arvaniti; Effie G Papageorgiou; Issidora S Papassideri; Konstantinos Stamoulis; Angelo D'Alessandro; Anastasios G Kriebardis; Marianna H Antonelou
Journal:  Front Physiol       Date:  2022-06-08       Impact factor: 4.755

4.  Epidemiological and molecular study of hemoglobinopathies in Mauritanian patients.

Authors:  Taher Mahmoud; Chaima Sahli; Sondess Hadj Fredj; Yessine Amri; Rim Othmani; Ghaber S Mohamed; Ekhtelbenina Zein; Taieb Messaoud
Journal:  Mol Genet Genomic Med       Date:  2022-09-15       Impact factor: 2.473

Review 5.  Genome-based therapeutic interventions for β-type hemoglobinopathies.

Authors:  Kariofyllis Karamperis; Maria T Tsoumpeli; Fotios Kounelis; Maria Koromina; Christina Mitropoulou; Catia Moutinho; George P Patrinos
Journal:  Hum Genomics       Date:  2021-06-05       Impact factor: 4.639

6.  Stability of Maleimide-PEG and Mono-Sulfone-PEG Conjugation to a Novel Engineered Cysteine in the Human Hemoglobin Alpha Subunit.

Authors:  Chris E Cooper; Matthew Bird; XiaoBo Sheng; Ji-Won Choi; Gary G A Silkstone; Michelle Simons; Natalie Syrett; Riccardo Piano; Luca Ronda; Stefano Bettati; Gianluca Paredi; Andrea Mozzarelli; Brandon J Reeder
Journal:  Front Chem       Date:  2021-07-26       Impact factor: 5.221

  6 in total

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