| Literature DB >> 33109079 |
Qian Wang1,2, Xiancai Hao1,3, Kaiqiang Liu1,2, Bo Feng1,3, Shuo Li1,4, Zhihua Zhang1,3, Lili Tang1,2, Shahid Mahboob5, Changwei Shao6,7.
Abstract
BACKGROUND: Temperature is known to affect living organisms and alter the expression of responsive genes, which affects a series of life processes, such as development, reproduction and metabolism. Several genes and gene families have been involved in high temperature responses, such as heat shock protein (hsp) family, Jumonji family and genes related to cortisol synthesis. Gonad is a vital organ related to the existence of a species. However, the comprehensive understanding of gonadal responses to environmental temperature is limited.Entities:
Keywords: Cortisol; Epigenetic regulator; Gonad; Heat shock protein; Heat stress; Transcriptome analysis
Mesh:
Year: 2020 PMID: 33109079 PMCID: PMC7590793 DOI: 10.1186/s12864-020-07157-x
Source DB: PubMed Journal: BMC Genomics ISSN: 1471-2164 Impact factor: 3.969
Fig. 1Analysis of differentially expressed genes (DEGs) under heat stress. a Principal component analysis (PCA) showed a clear cluster separation of the control (CT) and heat-stress (HS) groups. In CT group, females, pseudomales and males were apart from each other. In HS group, pseudomales and males formed one cluster while females exhibited another cluster. Each plot represents an average expression level of three biological replicants. b Number of DEGs identified from females, pseudomales and males between control (CT) and heat-stress (HS) groups. Red and blue colors indicate up-regulated and down-regulated genes in HS vs. CT, respectively. c Venn diagram depicting the distribution of the DEGs in HS vs. CT comparison in females, pseudomales and males
Fig. 2Heatmap analysis of sex-specific differentially expressed genes (DEGs) involved in high temperature response. Each row represents a gene listed on the right. Each column stands for a comparison of heat-stress (HS) vs. control (CT) groups in females, pseudomales and males. The expression of genes is color-coded from low (blue) to high (red) (DEGs, adjusted p < 0.001, log2FC > 1 or < − 1)
Fig. 3Analysis of differentially expressed genes (DEGs) shared among females, pseudomales and males. a Gene Ontology (GO) classifications of 1048 DEGs shared among three sexes in heat-stress (HS) vs. control (CT) groups. b Enriched KEGG pathways of 1048 DEGs shared among three sexes in heat-stress (HS) vs. control (CT) groups (p < 0.05)
Fig. 4Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) validation of RNA-Seq data. Nine DEGs, including hspa1, hsf4, hsc70, eef1akmt4, hsd11b2, hsd17b1, saml, esrrα and ar were selected for qRT-PCR. The left Y-axis represents the relative expression of DEGs, and the right Y-axis represents Fragments Per Kilobase Million (FPKM) determined by RNA-Seq. Data in females, pseudomales and males from each group (control group: CT_F, CT_P and CT_M; heat-stress group: HS_F, HS_P and HS_M) represent as mean ± S.E.M. of three biological replicates (*p < 0.05; **p < 0.01; ***p < 0.001)