Literature DB >> 33108679

RNA-PROTACs: Degraders of RNA-Binding Proteins.

Alice Ghidini1, Antoine Cléry2, François Halloy1, Frédéric H T Allain2, Jonathan Hall1.   

Abstract

Defects in the functions of RNA binding proteins (RBPs) are at the origin of many diseases; however, targeting RBPs with conventional drugs has proven difficult. PROTACs are a new class of drugs that mediate selective degradation of a target protein through a cell's ubiquitination machinery. PROTACs comprise a moiety that binds the selected protein, conjugated to a ligand of an E3 ligase. Herein, we introduce RNA-PROTACs as a new concept in the targeting of RBPs. These chimeric structures employ small RNA mimics as targeting groups that dock the RNA-binding site of the RBP, whereupon a conjugated E3-recruiting peptide derived from the HIF-1α protein directs the RBP for proteasomal degradation. We performed a proof-of-concept demonstration with the degradation of two RBPs-a stem cell factor LIN28 and a splicing factor RBFOX1-and showed their use in cancer cell lines. The RNA-PROTAC approach opens the way to rapid, selective targeting of RBPs in a rational and general fashion.
© 2020 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.

Entities:  

Keywords:  Lin28; PROTAC; RNA-binding proteins; oligonucleotides; proteasomal degradation

Mesh:

Substances:

Year:  2020        PMID: 33108679      PMCID: PMC7898822          DOI: 10.1002/anie.202012330

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  78 in total

Review 1.  Proteolysis targeting chimeras (PROTACs) in 'beyond rule-of-five' chemical space: Recent progress and future challenges.

Authors:  Scott D Edmondson; Bin Yang; Charlene Fallan
Journal:  Bioorg Med Chem Lett       Date:  2019-04-20       Impact factor: 2.823

Review 2.  Phosphorothioate oligodeoxynucleotides: what is their origin and what is unique about them?

Authors:  F Eckstein
Journal:  Antisense Nucleic Acid Drug Dev       Date:  2000-04

3.  Arvinas, Pfizer Team Up on PROTACs.

Authors: 
Journal:  Cancer Discov       Date:  2018-02-16       Impact factor: 39.397

4.  C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation.

Authors:  A C Epstein; J M Gleadle; L A McNeill; K S Hewitson; J O'Rourke; D R Mole; M Mukherji; E Metzen; M I Wilson; A Dhanda; Y M Tian; N Masson; D L Hamilton; P Jaakkola; R Barstead; J Hodgkin; P H Maxwell; C W Pugh; C J Schofield; P J Ratcliffe
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

5.  Pharmacokinetic properties of 2'-O-(2-methoxyethyl)-modified oligonucleotide analogs in rats.

Authors:  R S Geary; T A Watanabe; L Truong; S Freier; E A Lesnik; N B Sioufi; H Sasmor; M Manoharan; A A Levin
Journal:  J Pharmacol Exp Ther       Date:  2001-03       Impact factor: 4.030

6.  Use of PROTACS as molecular probes of angiogenesis.

Authors:  Paola Bargagna-Mohan; Sun-Hee Baek; Hyosung Lee; Kyungbo Kim; Royce Mohan
Journal:  Bioorg Med Chem Lett       Date:  2005-06-02       Impact factor: 2.823

Review 7.  Specificity and nonspecificity in RNA-protein interactions.

Authors:  Eckhard Jankowsky; Michael E Harris
Journal:  Nat Rev Mol Cell Biol       Date:  2015-08-19       Impact factor: 94.444

8.  The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain.

Authors:  Lauren T Gehman; Peter Stoilov; Jamie Maguire; Andrey Damianov; Chia-Ho Lin; Lily Shiue; Manuel Ares; Istvan Mody; Douglas L Black
Journal:  Nat Genet       Date:  2011-05-29       Impact factor: 38.330

9.  The Effects of 2'-O-Methoxyethyl Oligonucleotides on Renal Function in Humans.

Authors:  Stanley T Crooke; Brenda F Baker; Nguyen C Pham; Steven G Hughes; T Jesse Kwoh; Danlin Cai; Sotirios Tsimikas; Richard S Geary; Sanjay Bhanot
Journal:  Nucleic Acid Ther       Date:  2017-11-29       Impact factor: 5.486

10.  Lin28 promotes transformation and is associated with advanced human malignancies.

Authors:  Srinivas R Viswanathan; John T Powers; William Einhorn; Yujin Hoshida; Tony L Ng; Sara Toffanin; Maureen O'Sullivan; Jun Lu; Letha A Phillips; Victoria L Lockhart; Samar P Shah; Pradeep S Tanwar; Craig H Mermel; Rameen Beroukhim; Mohammad Azam; Jose Teixeira; Matthew Meyerson; Timothy P Hughes; Josep M Llovet; Jerald Radich; Charles G Mullighan; Todd R Golub; Poul H Sorensen; George Q Daley
Journal:  Nat Genet       Date:  2009-05-31       Impact factor: 38.330

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  15 in total

Review 1.  PROTACs: great opportunities for academia and industry (an update from 2020 to 2021).

Authors:  Ming He; Chaoguo Cao; Zhihao Ni; Yongbo Liu; Peilu Song; Shuang Hao; Yuna He; Xiuyun Sun; Yu Rao
Journal:  Signal Transduct Target Ther       Date:  2022-06-09

Review 2.  Major Advances in Emerging Degrader Technologies.

Authors:  Hang Luo; Li Wu; Yujian He; Chong Qin; Xinjing Tang
Journal:  Front Cell Dev Biol       Date:  2022-06-22

3.  Nucleotide-amino acid π-stacking interactions initiate photo cross-linking in RNA-protein complexes.

Authors:  Anna Knörlein; Chris P Sarnowski; Tebbe de Vries; Moritz Stoltz; Michael Götze; Ruedi Aebersold; Frédéric H-T Allain; Alexander Leitner; Jonathan Hall
Journal:  Nat Commun       Date:  2022-05-17       Impact factor: 17.694

4.  Therapeutic targeting of RNA-binding protein by RNA-PROTAC.

Authors:  Xinyi Li; Wenchen Pu; Song Chen; Yong Peng
Journal:  Mol Ther       Date:  2021-05-12       Impact factor: 12.910

5.  Destruction of DNA-Binding Proteins by Programmable Oligonucleotide PROTAC (O'PROTAC): Effective Targeting of LEF1 and ERG.

Authors:  Jingwei Shao; Yuqian Yan; Donglin Ding; Dejie Wang; Yundong He; Yunqian Pan; Wei Yan; Anupreet Kharbanda; Hong-Yu Li; Haojie Huang
Journal:  Adv Sci (Weinh)       Date:  2021-08-16       Impact factor: 16.806

Review 6.  CELF Family Proteins in Cancer: Highlights on the RNA-Binding Protein/Noncoding RNA Regulatory Axis.

Authors:  Maryam Nasiri-Aghdam; Texali C Garcia-Garduño; Luis Felipe Jave-Suárez
Journal:  Int J Mol Sci       Date:  2021-10-14       Impact factor: 5.923

7.  Innovative developments and emerging technologies in RNA therapeutics.

Authors:  François Halloy; Annabelle Biscans; Katherine E Bujold; Alexandre Debacker; Alyssa C Hill; Aurélie Lacroix; Olivia Luige; Roger Strömberg; Linda Sundstrom; Jörg Vogel; Alice Ghidini
Journal:  RNA Biol       Date:  2021-12-31       Impact factor: 4.652

Review 8.  Proteolysis-targeting chimeras (PROTACs) in cancer therapy.

Authors:  Xinyi Li; Wenchen Pu; Qingquan Zheng; Min Ai; Song Chen; Yong Peng
Journal:  Mol Cancer       Date:  2022-04-11       Impact factor: 27.401

9.  TF-PROTACs Enable Targeted Degradation of Transcription Factors.

Authors:  Jing Liu; He Chen; H Ümit Kaniskan; Ling Xie; Xian Chen; Jian Jin; Wenyi Wei
Journal:  J Am Chem Soc       Date:  2021-06-08       Impact factor: 15.419

Review 10.  PROTAC targeted protein degraders: the past is prologue.

Authors:  Miklós Békés; David R Langley; Craig M Crews
Journal:  Nat Rev Drug Discov       Date:  2022-01-18       Impact factor: 112.288

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