Literature DB >> 33106631

Triticum population sequencing provides insights into wheat adaptation.

Yao Zhou1,2, Xuebo Zhao1,3, Yiwen Li1, Jun Xu1,3, Aoyue Bi1,3, Lipeng Kang1,3, Daxing Xu1,3, Haofeng Chen4,5, Ying Wang3, Yuan-Ge Wang4, Sanyang Liu6, Chengzhi Jiao7, Hongfeng Lu7, Jing Wang1, Changbin Yin1, Yuling Jiao8,9, Fei Lu10,11,12.   

Abstract

Bread wheat expanded its habitat from a core area of the Fertile Crescent to global environments within ~10,000 years. The genetic mechanisms of this remarkable evolutionary success are not well understood. By whole-genome sequencing of populations from 25 subspecies within the genera Triticum and Aegilops, we identified composite introgression from wild populations contributing to a substantial portion (4-32%) of the bread wheat genome, which increased the genetic diversity of bread wheat and allowed its divergent adaptation. Meanwhile, convergent adaptation to human selection showed 2- to 16-fold enrichment relative to random expectation-a certain set of genes were repeatedly selected in Triticum species despite their drastic differences in ploidy levels and growing zones, indicating the important role of evolutionary constraints in shaping the adaptive landscape of bread wheat. These results showed the genetic necessities of wheat as a global crop and provided new perspectives on transferring adaptive success across species for crop improvement.

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Year:  2020        PMID: 33106631     DOI: 10.1038/s41588-020-00722-w

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  62 in total

1.  Archaeology. The cradle of agriculture.

Authors:  S Lev-Yadun; A Gopher; S Abbo
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

Review 2.  Genetics and geography of wild cereal domestication in the near east.

Authors:  Francesco Salamini; Hakan Ozkan; Andrea Brandolini; Ralf Schäfer-Pregl; William Martin
Journal:  Nat Rev Genet       Date:  2002-06       Impact factor: 53.242

3.  Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome.

Authors:  Fei He; Raj Pasam; Fan Shi; Surya Kant; Gabriel Keeble-Gagnere; Pippa Kay; Kerrie Forrest; Allan Fritz; Pierre Hucl; Krystalee Wiebe; Ron Knox; Richard Cuthbert; Curtis Pozniak; Alina Akhunova; Peter L Morrell; John P Davies; Steve R Webb; German Spangenberg; Ben Hayes; Hans Daetwyler; Josquin Tibbits; Matthew Hayden; Eduard Akhunov
Journal:  Nat Genet       Date:  2019-05-01       Impact factor: 38.330

Review 4.  Evolution of polyploid triticum wheats under cultivation: the role of domestication, natural hybridization and allopolyploid speciation in their diversification.

Authors:  Yoshihiro Matsuoka
Journal:  Plant Cell Physiol       Date:  2011-02-10       Impact factor: 4.927

5.  Grinding up wheat: a massive loss of nucleotide diversity since domestication.

Authors:  A Haudry; A Cenci; C Ravel; T Bataillon; D Brunel; C Poncet; I Hochu; S Poirier; S Santoni; S Glémin; J David
Journal:  Mol Biol Evol       Date:  2007-04-18       Impact factor: 16.240

6.  Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.

Authors:  Eduard D Akhunov; Alina R Akhunova; Olin D Anderson; James A Anderson; Nancy Blake; Michael T Clegg; Devin Coleman-Derr; Emily J Conley; Curt C Crossman; Karin R Deal; Jorge Dubcovsky; Bikram S Gill; Yong Q Gu; Jakub Hadam; Hwayoung Heo; Naxin Huo; Gerard R Lazo; Ming-Cheng Luo; Yaqin Q Ma; David E Matthews; Patrick E McGuire; Peter L Morrell; Calvin O Qualset; James Renfro; Dindo Tabanao; Luther E Talbert; Chao Tian; Donna M Toleno; Marilyn L Warburton; Frank M You; Wenjun Zhang; Jan Dvorak
Journal:  BMC Genomics       Date:  2010-12-14       Impact factor: 3.969

7.  Decline in climate resilience of European wheat.

Authors:  Helena Kahiluoto; Janne Kaseva; Jan Balek; Jørgen E Olesen; Margarita Ruiz-Ramos; Anne Gobin; Kurt Christian Kersebaum; Jozef Takáč; Francoise Ruget; Roberto Ferrise; Pavol Bezak; Gemma Capellades; Camilla Dibari; Hanna Mäkinen; Claas Nendel; Domenico Ventrella; Alfredo Rodríguez; Marco Bindi; Mirek Trnka
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-24       Impact factor: 11.205

8.  Pervasive hybridizations in the history of wheat relatives.

Authors:  Sylvain Glémin; Celine Scornavacca; Jacques Dainat; Concetta Burgarella; Véronique Viader; Morgane Ardisson; Gautier Sarah; Sylvain Santoni; Jacques David; Vincent Ranwez
Journal:  Sci Adv       Date:  2019-05-01       Impact factor: 14.136

9.  Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat.

Authors:  Hong Cheng; Jing Liu; Jia Wen; Xiaojun Nie; Luohao Xu; Ningbo Chen; Zhongxing Li; Qilin Wang; Zhuqing Zheng; Ming Li; Licao Cui; Zihua Liu; Jianxin Bian; Zhonghua Wang; Shengbao Xu; Qin Yang; Rudi Appels; Dejun Han; Weining Song; Qixin Sun; Yu Jiang
Journal:  Genome Biol       Date:  2019-07-12       Impact factor: 13.583

Review 10.  Genome plasticity a key factor in the success of polyploid wheat under domestication.

Authors:  Jorge Dubcovsky; Jan Dvorak
Journal:  Science       Date:  2007-06-29       Impact factor: 47.728

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  42 in total

1.  Fine mapping and distribution analysis of hybrid necrosis genes Ne1 and Ne2 in wheat in China.

Authors:  Min Zhang; Shikai Lv; Yanzhen Wang; Siwen Wang; Chunhuan Chen; Changyou Wang; Yajuan Wang; Hong Zhang; Wanquan Ji
Journal:  Theor Appl Genet       Date:  2022-01-28       Impact factor: 5.699

2.  Improving bread wheat yield through modulating an unselected AP2/ERF gene.

Authors:  Yuange Wang; Fei Du; Jian Wang; Ke Wang; Caihuan Tian; Xiaoquan Qi; Fei Lu; Xigang Liu; Xingguo Ye; Yuling Jiao
Journal:  Nat Plants       Date:  2022-07-18       Impact factor: 17.352

Review 3.  Wheat genomic study for genetic improvement of traits in China.

Authors:  Jun Xiao; Bao Liu; Yingyin Yao; Zifeng Guo; Haiyan Jia; Lingrang Kong; Aimin Zhang; Wujun Ma; Zhongfu Ni; Shengbao Xu; Fei Lu; Yuannian Jiao; Wuyun Yang; Xuelei Lin; Silong Sun; Zefu Lu; Lifeng Gao; Guangyao Zhao; Shuanghe Cao; Qian Chen; Kunpu Zhang; Mengcheng Wang; Meng Wang; Zhaorong Hu; Weilong Guo; Guoqiang Li; Xin Ma; Junming Li; Fangpu Han; Xiangdong Fu; Zhengqiang Ma; Daowen Wang; Xueyong Zhang; Hong-Qing Ling; Guangmin Xia; Yiping Tong; Zhiyong Liu; Zhonghu He; Jizeng Jia; Kang Chong
Journal:  Sci China Life Sci       Date:  2022-08-24       Impact factor: 10.372

4.  Three-nucleotide periodicity of nucleotide diversity in a population enables the identification of open reading frames.

Authors:  Mengyun Jiang; Weidong Ning; Shishi Wu; Xingwei Wang; Kun Zhu; Aomei Li; Yongyao Li; Shifeng Cheng; Bo Song
Journal:  Brief Bioinform       Date:  2022-07-18       Impact factor: 13.994

5.  Evolution of the DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN subfamily in green plants.

Authors:  Jiapeng Han; Xiaoxue Xie; Yang Zhang; Xiaofen Yu; Guangyuan He; Yin Li; Guangxiao Yang
Journal:  Plant Physiol       Date:  2022-08-29       Impact factor: 8.005

6.  Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae.

Authors:  Fei Zhao; Shilong Tian; Qiuhong Wu; Zijuan Li; Luhuan Ye; Yili Zhuang; Meiyue Wang; Yilin Xie; Shenghao Zou; Wan Teng; Yiping Tong; Dingzhong Tang; Ajay Kumar Mahato; Moussa Benhamed; Zhiyong Liu; Yijing Zhang
Journal:  Plant Commun       Date:  2022-02-18

7.  TdPm60 identified in wild emmer wheat is an ortholog of Pm60 and constitutes a strong candidate for PmG16 powdery mildew resistance.

Authors:  Yinghui Li; Zhen-Zhen Wei; Andrii Fatiukha; Samidha Jaiwar; Hanchao Wang; Samiha Hasan; Zhiyong Liu; Hanan Sela; Tamar Krugman; Tzion Fahima
Journal:  Theor Appl Genet       Date:  2021-06-08       Impact factor: 5.699

8.  Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat.

Authors:  Guang Yang; Wenqiu Pan; Ruoyu Zhang; Yan Pan; Qifan Guo; Weining Song; Weijun Zheng; Xiaojun Nie
Journal:  BMC Genomics       Date:  2021-07-04       Impact factor: 3.969

Review 9.  Present and future prospects for wheat improvement through genome editing and advanced technologies.

Authors:  Shaoya Li; Chen Zhang; Jingying Li; Lei Yan; Ning Wang; Lanqin Xia
Journal:  Plant Commun       Date:  2021-06-05

10.  Introgressing the Aegilops tauschii genome into wheat as a basis for cereal improvement.

Authors:  Yun Zhou; Shenglong Bai; Hao Li; Guiling Sun; Dale Zhang; Feifei Ma; Xinpeng Zhao; Fang Nie; Jingyao Li; Liyang Chen; Linlin Lv; Lele Zhu; Ruixiao Fan; Yifan Ge; Aaqib Shaheen; Guanghui Guo; Zhen Zhang; Jianchao Ma; Huihui Liang; Xiaolong Qiu; Jiamin Hu; Ting Sun; Jingyi Hou; Hongxing Xu; Shulin Xue; Wenkai Jiang; Jinling Huang; Suoping Li; Changsong Zou; Chun-Peng Song
Journal:  Nat Plants       Date:  2021-05-27       Impact factor: 15.793

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