Literature DB >> 31043759

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome.

Fei He1, Raj Pasam2, Fan Shi2, Surya Kant2, Gabriel Keeble-Gagnere2, Pippa Kay2, Kerrie Forrest2, Allan Fritz3, Pierre Hucl4, Krystalee Wiebe4, Ron Knox5, Richard Cuthbert5, Curtis Pozniak4, Alina Akhunova1,6, Peter L Morrell7, John P Davies8, Steve R Webb8, German Spangenberg2,9, Ben Hayes2,10, Hans Daetwyler2,9, Josquin Tibbits2,9, Matthew Hayden11,12, Eduard Akhunov13.   

Abstract

Introgression is a potential source of beneficial genetic diversity. The contribution of introgression to adaptive evolution and improvement of wheat as it was disseminated worldwide remains unknown. We used targeted re-sequencing of 890 diverse accessions of hexaploid and tetraploid wheat to identify wild-relative introgression. Introgression, and selection for improvement and environmental adaptation, each reduced deleterious allele burden. Introgression increased diversity genome wide and in regions harboring major agronomic genes, and contributed alleles explaining a substantial proportion of phenotypic variation. These results suggest that historic gene flow from wild relatives made a substantial contribution to the adaptive diversity of modern bread wheat.

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Year:  2019        PMID: 31043759     DOI: 10.1038/s41588-019-0382-2

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  73 in total

1.  Exome association analysis sheds light onto leaf rust (Puccinia triticina) resistance genes currently used in wheat breeding (Triticum aestivum L.).

Authors:  Fang Liu; Yusheng Zhao; Sebastian Beier; Yong Jiang; Patrick Thorwarth; C Friedrich H Longin; Martin Ganal; Axel Himmelbach; Jochen C Reif; Albert W Schulthess
Journal:  Plant Biotechnol J       Date:  2019-12-20       Impact factor: 9.803

2.  Triticum population sequencing provides insights into wheat adaptation.

Authors:  Yao Zhou; Xuebo Zhao; Yiwen Li; Jun Xu; Aoyue Bi; Lipeng Kang; Daxing Xu; Haofeng Chen; Ying Wang; Yuan-Ge Wang; Sanyang Liu; Chengzhi Jiao; Hongfeng Lu; Jing Wang; Changbin Yin; Yuling Jiao; Fei Lu
Journal:  Nat Genet       Date:  2020-10-26       Impact factor: 38.330

3.  High-resolution mapping of rachis nodes per rachis, a critical determinant of grain yield components in wheat.

Authors:  Kai P Voss-Fels; Gabriel Keeble-Gagnère; Lee T Hickey; Josquin Tibbits; Sergej Nagornyy; Matthew J Hayden; Raj K Pasam; Surya Kant; Wolfgang Friedt; Rod J Snowdon; Rudi Appels; Benjamin Wittkop
Journal:  Theor Appl Genet       Date:  2019-06-28       Impact factor: 5.699

4.  The genomic basis of geographic differentiation and fiber improvement in cultivated cotton.

Authors:  Shoupu He; Gaofei Sun; Xiaoli Geng; Wenfang Gong; Panhong Dai; Yinhua Jia; Weijun Shi; Zhaoe Pan; Junduo Wang; Liyuan Wang; Songhua Xiao; Baojun Chen; Shufang Cui; Chunyuan You; Zongming Xie; Feng Wang; Jie Sun; Guoyong Fu; Zhen Peng; Daowu Hu; Liru Wang; Baoyin Pang; Xiongming Du
Journal:  Nat Genet       Date:  2021-04-15       Impact factor: 38.330

5.  Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias).

Authors:  Brice A J Sarver; Nathanael D Herrera; David Sneddon; Samuel S Hunter; Matthew L Settles; Zev Kronenberg; John R Demboski; Jeffrey M Good; Jack Sullivan
Journal:  Syst Biol       Date:  2021-08-11       Impact factor: 15.683

6.  Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding.

Authors:  Michael F Scott; Nick Fradgley; Richard Mott; James Cockram; Alison R Bentley; Thomas Brabbs; Fiona Corke; Keith A Gardner; Richard Horsnell; Phil Howell; Olufunmilayo Ladejobi; Ian J Mackay
Journal:  Genome Biol       Date:  2021-05-06       Impact factor: 13.583

7.  Wheat heat tolerance is impaired by heightened deletions in the distal end of 4AL chromosomal arm.

Authors:  Huijie Zhai; Congcong Jiang; Yue Zhao; Shuling Yang; Yiwen Li; Kunfang Yan; Shuyu Wu; Bingke Luo; Yi Du; Huaibing Jin; Xin Liu; Yanbin Zhang; Fei Lu; Matthew Reynolds; Xingqi Ou; Wenchen Qiao; Zhikai Jiang; Tao Peng; Derong Gao; Wenjing Hu; Jiangchun Wang; Haitao Gao; Guihong Yin; Kunpu Zhang; Guangwei Li; Daowen Wang
Journal:  Plant Biotechnol J       Date:  2021-01-25       Impact factor: 9.803

8.  Identification of a major dominant gene for race-nonspecific tan spot resistance in wild emmer wheat.

Authors:  Justin D Faris; Megan E Overlander; Gayan K Kariyawasam; Arron Carter; Steven S Xu; Zhaohui Liu
Journal:  Theor Appl Genet       Date:  2019-12-20       Impact factor: 5.699

9.  Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat.

Authors:  Holly Hone; Ross Mann; Guodong Yang; Jatinder Kaur; Ian Tannenbaum; Tongda Li; German Spangenberg; Timothy Sawbridge
Journal:  Sci Rep       Date:  2021-06-07       Impact factor: 4.996

10.  A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat.

Authors:  Nikolai M Adamski; Philippa Borrill; Jemima Brinton; Sophie A Harrington; Clémence Marchal; Alison R Bentley; William D Bovill; Luigi Cattivelli; James Cockram; Bruno Contreras-Moreira; Brett Ford; Sreya Ghosh; Wendy Harwood; Keywan Hassani-Pak; Sadiye Hayta; Lee T Hickey; Kostya Kanyuka; Julie King; Marco Maccaferrri; Guy Naamati; Curtis J Pozniak; Ricardo H Ramirez-Gonzalez; Carolina Sansaloni; Ben Trevaskis; Luzie U Wingen; Brande Bh Wulff; Cristobal Uauy
Journal:  Elife       Date:  2020-03-24       Impact factor: 8.140

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