Literature DB >> 17600208

Genome plasticity a key factor in the success of polyploid wheat under domestication.

Jorge Dubcovsky1, Jan Dvorak.   

Abstract

Wheat was domesticated about 10,000 years ago and has since spread worldwide to become one of the major crops. Its adaptability to diverse environments and end uses is surprising given the diversity bottlenecks expected from recent domestication and polyploid speciation events. Wheat compensates for these bottlenecks by capturing part of the genetic diversity of its progenitors and by generating new diversity at a relatively fast pace. Frequent gene deletions and disruptions generated by a fast replacement rate of repetitive sequences are buffered by the polyploid nature of wheat, resulting in subtle dosage effects on which selection can operate.

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Year:  2007        PMID: 17600208      PMCID: PMC4737438          DOI: 10.1126/science.1143986

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  42 in total

1.  Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat.

Authors:  H Shaked; K Kashkush; H Ozkan; M Feldman; A A Levy
Journal:  Plant Cell       Date:  2001-08       Impact factor: 11.277

2.  Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes.

Authors:  Wusirika Ramakrishna; Jorge Dubcovsky; Yong-Jin Park; Carlos Busso; John Emberton; Phillip SanMiguel; Jeffrey L Bennetzen
Journal:  Genetics       Date:  2002-11       Impact factor: 4.562

3.  Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat.

Authors:  Khalil Kashkush; Moshe Feldman; Avraham A Levy
Journal:  Nat Genet       Date:  2002-12-16       Impact factor: 38.330

4.  Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat.

Authors:  Xiu-Ying Kong; Yong Qiang Gu; Frank M You; Jorge Dubcovsky; Olin D Anderson
Journal:  Plant Mol Biol       Date:  2004-01       Impact factor: 4.076

5.  The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat.

Authors:  Cristobal Uauy; Juan Carlos Brevis; Jorge Dubcovsky
Journal:  J Exp Bot       Date:  2006-07-10       Impact factor: 6.992

6.  Wheat grain hardness results from highly conserved mutations in the friabilin components puroindoline a and b.

Authors:  M J Giroux; C F Morris
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

7.  Genome size and the proportion of repeated nucleotide sequence DNA in plants.

Authors:  R B Flavell; M D Bennett; J B Smith; D B Smith
Journal:  Biochem Genet       Date:  1974-10       Impact factor: 1.890

8.  The effects of artificial selection on the maize genome.

Authors:  Stephen I Wright; Irie Vroh Bi; Steve G Schroeder; Masanori Yamasaki; John F Doebley; Michael D McMullen; Brandon S Gaut
Journal:  Science       Date:  2005-05-27       Impact factor: 47.728

9.  Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids.

Authors:  Jianlin Wang; Lu Tian; Andreas Madlung; Hyeon-Se Lee; Meng Chen; Jinsuk J Lee; Brian Watson; Trevor Kagochi; Luca Comai; Z Jeffrey Chen
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

10.  The wheat VRN2 gene is a flowering repressor down-regulated by vernalization.

Authors:  Liuling Yan; Artem Loukoianov; Ann Blechl; Gabriela Tranquilli; Wusirika Ramakrishna; Phillip SanMiguel; Jeffrey L Bennetzen; Viviana Echenique; Jorge Dubcovsky
Journal:  Science       Date:  2004-03-12       Impact factor: 47.728

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  313 in total

1.  Extensive and heritable epigenetic remodeling and genetic stability accompany allohexaploidization of wheat.

Authors:  Na Zhao; Bo Zhu; Mingjiu Li; Li Wang; Liying Xu; Huakun Zhang; Shuangshuang Zheng; Bao Qi; Fangpu Han; Bao Liu
Journal:  Genetics       Date:  2011-04-21       Impact factor: 4.562

Review 2.  The more the better? The role of polyploidy in facilitating plant invasions.

Authors:  Mariska te Beest; Johannes J Le Roux; David M Richardson; Anne K Brysting; Jan Suda; Magdalena Kubesová; Petr Pysek
Journal:  Ann Bot       Date:  2011-10-31       Impact factor: 4.357

3.  Marker utility of miniature inverted-repeat transposable elements for wheat biodiversity and evolution.

Authors:  Beery Yaakov; Elif Ceylan; Katherine Domb; Khalil Kashkush
Journal:  Theor Appl Genet       Date:  2012-05       Impact factor: 5.699

Review 4.  RNA interference for wheat functional gene analysis.

Authors:  Daolin Fu; Cristobal Uauy; Ann Blechl; Jorge Dubcovsky
Journal:  Transgenic Res       Date:  2007-10-19       Impact factor: 2.788

5.  Identification of candidate CBF genes for the frost tolerance locus Fr-Am2 in Triticum monococcum.

Authors:  Andrea K Knox; Chengxia Li; Attila Vágújfalvi; Gabor Galiba; Eric J Stockinger; Jorge Dubcovsky
Journal:  Plant Mol Biol       Date:  2008-06       Impact factor: 4.076

6.  Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

Authors:  Jetty S S Ammiraju; Fei Lu; Abhijit Sanyal; Yeisoo Yu; Xiang Song; Ning Jiang; Ana Clara Pontaroli; Teri Rambo; Jennifer Currie; Kristi Collura; Jayson Talag; Chuanzhu Fan; Jose Luis Goicoechea; Andrea Zuccolo; Jinfeng Chen; Jeffrey L Bennetzen; Mingsheng Chen; Scott Jackson; Rod A Wing
Journal:  Plant Cell       Date:  2008-12-19       Impact factor: 11.277

7.  Intrinsic karyotype stability and gene copy number variations may have laid the foundation for tetraploid wheat formation.

Authors:  Huakun Zhang; Yao Bian; Xiaowan Gou; Yuzhu Dong; Sachin Rustgi; Bangjiao Zhang; Chunming Xu; Ning Li; Bao Qi; Fangpu Han; Diter von Wettstein; Bao Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

8.  Evolutionary origin of the segmental duplication encompassing the wheat GLU-B1 locus encoding the overexpressed Bx7 (Bx7OE) high molecular weight glutenin subunit.

Authors:  Raja Ragupathy; Hamid A Naeem; Elsa Reimer; Odean M Lukow; Harry D Sapirstein; Sylvie Cloutier
Journal:  Theor Appl Genet       Date:  2007-11-06       Impact factor: 5.699

Review 9.  Molecular mechanisms of polyploidy and hybrid vigor.

Authors:  Z Jeffrey Chen
Journal:  Trends Plant Sci       Date:  2010-01-18       Impact factor: 18.313

10.  Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation.

Authors:  Jizeng Jia; Shancen Zhao; Xiuying Kong; Yingrui Li; Guangyao Zhao; Weiming He; Rudi Appels; Matthias Pfeifer; Yong Tao; Xueyong Zhang; Ruilian Jing; Chi Zhang; Youzhi Ma; Lifeng Gao; Chuan Gao; Manuel Spannagl; Klaus F X Mayer; Dong Li; Shengkai Pan; Fengya Zheng; Qun Hu; Xianchun Xia; Jianwen Li; Qinsi Liang; Jie Chen; Thomas Wicker; Caiyun Gou; Hanhui Kuang; Genyun He; Yadan Luo; Beat Keller; Qiuju Xia; Peng Lu; Junyi Wang; Hongfeng Zou; Rongzhi Zhang; Junyang Xu; Jinlong Gao; Christopher Middleton; Zhiwu Quan; Guangming Liu; Jian Wang; Huanming Yang; Xu Liu; Zhonghu He; Long Mao; Jun Wang
Journal:  Nature       Date:  2013-03-24       Impact factor: 49.962

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