Literature DB >> 33093735

Testing for inequality constraints in singular models by trimming or winsorizing the variance matrix.

Ori Davidov1, Casey M Jelsema2, Shyamal Peddada3.   

Abstract

There are many applications in which a statistic follows, at least asymptotically, a normal distribution with a singular or nearly singular variance matrix. A classic example occurs in linear regression models under multicollinearity but there are many more such examples. There is well-developed theory for testing linear equality constraints when the alternative is two-sided and the variance matrix is either singular or non-singular. In recent years there is considerable, and growing, interest in developing methods for situations in which the estimated variance matrix is nearly singular. However, there is no corresponding methodology for addressing one-sided, i.e., constrained or ordered alternatives. In this paper we develop a unified framework for analyzing such problems. Our approach may be viewed as the trimming or winsorizing of the eigenvalues of the corresponding variance matrix. The proposed methodology is applicable to a wide range of scientific problems and to a variety of statistical models in which inequality constraints arise. We illustrate the methodology using data from a gene expression microarray experiment obtained from the NIEHS' Fibroid Growth Study.

Entities:  

Keywords:  (nearly) singular covariance matrix; Constrained and ordered inference; Moore–Penrose inverse; generalized inverse; modified likelihood ratio test (mLRT)

Year:  2018        PMID: 33093735      PMCID: PMC7577112          DOI: 10.1080/01621459.2017.1301258

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  10 in total

1.  Gene selection and clustering for time-course and dose-response microarray experiments using order-restricted inference.

Authors:  Shyamal D Peddada; Edward K Lobenhofer; Leping Li; Cynthia A Afshari; Clarice R Weinberg; David M Umbach
Journal:  Bioinformatics       Date:  2003-05-01       Impact factor: 6.937

2.  ORIOGEN: order restricted inference for ordered gene expression data.

Authors:  S Peddada; S Harris; J Zajd; E Harvey
Journal:  Bioinformatics       Date:  2005-08-18       Impact factor: 6.937

3.  Robust ridge regression estimators for nonlinear models with applications to high throughput screening assay data.

Authors:  Changwon Lim
Journal:  Stat Med       Date:  2014-12-10       Impact factor: 2.373

4.  Order restricted inference for multivariate binary data with application to toxicology.

Authors:  Ori Davidov; Shyamal Peddada
Journal:  J Am Stat Assoc       Date:  2012-01-24       Impact factor: 5.033

5.  Robust Analysis of High Throughput Screening (HTS) Assay Data.

Authors:  Changwon Lim; Pranab K Sen; Shyamal D Peddada
Journal:  Technometrics       Date:  2013-05-01

6.  Growth of uterine leiomyomata among premenopausal black and white women.

Authors:  Shyamal D Peddada; Shannon K Laughlin; Kelly Miner; Jean-Philippe Guyon; Karen Haneke; Heather L Vahdat; Richard C Semelka; Ania Kowalik; Diane Armao; Barbara Davis; Donna Day Baird
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-01       Impact factor: 11.205

7.  Estimating False Discovery Proportion Under Arbitrary Covariance Dependence.

Authors:  Jianqing Fan; Xu Han; Weijie Gu
Journal:  J Am Stat Assoc       Date:  2012       Impact factor: 5.033

8.  Significance testing in ridge regression for genetic data.

Authors:  Erika Cule; Paolo Vineis; Maria De Iorio
Journal:  BMC Bioinformatics       Date:  2011-09-19       Impact factor: 3.169

9.  A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies.

Authors:  Anjana Grandhi; Wenge Guo; Shyamal D Peddada
Journal:  BMC Bioinformatics       Date:  2016-02-25       Impact factor: 3.169

10.  Gene expression in uterine leiomyoma from tumors likely to be growing (from black women over 35) and tumors likely to be non-growing (from white women over 35).

Authors:  Barbara J Davis; John I Risinger; Gadisetti V R Chandramouli; Pierre R Bushel; Donna Day Baird; Shyamal D Peddada
Journal:  PLoS One       Date:  2013-06-13       Impact factor: 3.240

  10 in total

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