Literature DB >> 25490981

Robust ridge regression estimators for nonlinear models with applications to high throughput screening assay data.

Changwon Lim1.   

Abstract

Nonlinear regression is often used to evaluate the toxicity of a chemical or a drug by fitting data from a dose-response study. Toxicologists and pharmacologists may draw a conclusion about whether a chemical is toxic by testing the significance of the estimated parameters. However, sometimes the null hypothesis cannot be rejected even though the fit is quite good. One possible reason for such cases is that the estimated standard errors of the parameter estimates are extremely large. In this paper, we propose robust ridge regression estimation procedures for nonlinear models to solve this problem. The asymptotic properties of the proposed estimators are investigated; in particular, their mean squared errors are derived. The performances of the proposed estimators are compared with several standard estimators using simulation studies. The proposed methodology is also illustrated using high throughput screening assay data obtained from the National Toxicology Program.
Copyright © 2014 John Wiley & Sons, Ltd.

Entities:  

Keywords:  HTS assay; M-estimation; dose-response; pharmacology; ridge regression; toxicology

Mesh:

Year:  2014        PMID: 25490981     DOI: 10.1002/sim.6391

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  2 in total

1.  Testing for inequality constraints in singular models by trimming or winsorizing the variance matrix.

Authors:  Ori Davidov; Casey M Jelsema; Shyamal Peddada
Journal:  J Am Stat Assoc       Date:  2018-06-05       Impact factor: 5.033

2.  Nonlinear ridge regression improves cell-type-specific differential expression analysis.

Authors:  Fumihiko Takeuchi; Norihiro Kato
Journal:  BMC Bioinformatics       Date:  2021-03-22       Impact factor: 3.169

  2 in total

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