| Literature DB >> 33068690 |
Carlos E Cardenas1, Beth M Beadle2, Adam S Garden3, Heath D Skinner4, Jinzhong Yang5, Dong Joo Rhee5, Rachel E McCarroll6, Tucker J Netherton5, Skylar S Gay5, Lifei Zhang5, Laurence E Court5.
Abstract
PURPOSE: To develop a deep learning model that generates consistent, high-quality lymph node clinical target volumes (CTV) contours for head and neck cancer (HNC) patients, as an integral part of a fully automated radiation treatment planning workflow. METHODS AND MATERIALS: Computed tomography (CT) scans from 71 HNC patients were retrospectively collected and split into training (n = 51), cross-validation (n = 10), and test (n = 10) data sets. All had target volume delineations covering lymph node levels Ia through V (Ia-V), Ib through V (Ib-V), II through IV (II-IV), and retropharyngeal (RP) nodes, which were previously approved by a radiation oncologist specializing in HNC. Volumes of interest (VOIs) about nodal levels were automatically identified using computer vision techniques. The VOI (cropped CT image) and approved contours were used to train a U-Net autosegmentation model. Each lymph node level was trained independently, with model parameters optimized by assessing performance on the cross-validation data set. Once optimal model parameters were identified, overlap and distance metrics were calculated between ground truth and autosegmentations on the test set. Lastly, this final model was used on 32 additional patient scans (not included in original 71 cases) and autosegmentations visually rated by 3 radiation oncologists as being "clinically acceptable without requiring edits," "requiring minor edits," or "requiring major edits."Entities:
Mesh:
Year: 2020 PMID: 33068690 PMCID: PMC9472456 DOI: 10.1016/j.ijrobp.2020.10.005
Source DB: PubMed Journal: Int J Radiat Oncol Biol Phys ISSN: 0360-3016 Impact factor: 8.013
Fig. 1.(A) Computed tomography scans of patients with head and neck cancer are normalized in the craniocaudal extent by automatically cropping out slices below and above predefined anatomic markers. (B) Identification of the left and right neck lymph node regions using computer vision techniques. Here the training data were doubled by performing a horizontal flip of the resulting input data. (C) Our deep learning model is trained using the unilateral input data to automatically segment individual lymph node target volumes.
Fig. 2.Box plot of the distributions of overlap and distance metrics in a comparison of the ground-truth and autosegmented volumes for each neck lymph node target volume. The boxplots are representative of individual metric’s interquartile range, whereas the whiskers denote values within 1.5 interquartile range, and the outliers (circles) are values that are found outside of this range. Abbreviations: DSC = dice similarity coefficient; FND = false negative dice; FPD = false positive dice; HD = hausdorff distance; MSD = mean Surface distance; VS = volume similarity.
Summary of quantitative evaluation between auto-segmented and ground-truth target volumes
| DSC | FND | FPD | VS | HD (mm) | MSD (mm) | |
|---|---|---|---|---|---|---|
|
| ||||||
| RP | 0.834 ± 0.030 | 0.234 ± 0.064 | 0.099 ± 0.033 | 0.135 ± 0.082 | 5.5 ± 1.3 | 1.0 ± 0.2 |
| Level II-IV | 0.907 ± 0.013 | 0.063 ± 0.023 | 0.123 ± 0.023 | −0.060 ± 0.038 | 8.4 ± 3.7 | 1.1 ± 0.2 |
| Level Ib-V | 0.909 ± 0.013 | 0.062 ± 0.021 | 0.120 ± 0.023 | −0.057 ± 0.036 | 8.1 ± 3.1 | 1.1 ± 0.2 |
| Level Ia-V | 0.897 ± 0.014 | 0.053 ± 0.019 | 0.154 ± 0.027 | −0.101 ± 0.037 | 8.6 ± 3.1 | 1.3 ± 0.2 |
Abbreviations: DSC = dice similarity coefficient; FND = false negative dice; FPD = false positive dice; HD = hausdorff distance; MSD = mean Surface distance; RP = retropharyngeal; VS = volume similarity.
Fig. 3.Visual comparison of the ground-truth and auto-segmented neck lymph node (LN) target volumes.
Qualitative scores for 32 cases separated by postoperative status
| Nonpostoperative (n = 25) | Postoperative (n = 7) | |||||
|---|---|---|---|---|---|---|
| Scores | Scores | |||||
| 1 | 2 | 3 | 1 | 2 | 3 | |
|
| ||||||
| Reviewer 1 | ||||||
| Ia-V right | 25 | 0 | 0 | 4 | 3 | 0 |
| Ia-V left | 25 | 0 | 0 | 7 | 0 | 0 |
| Ib-V right | 25 | 0 | 0 | 4 | 3 | 0 |
| Ib-V left | 25 | 0 | 0 | 7 | 0 | 0 |
| II-IV right | 25 | 0 | 0 | 4 | 3 | 0 |
| II-IV left | 25 | 0 | 0 | 7 | 0 | 0 |
| RP right | 25 | 0 | 0 | 7 | 0 | 0 |
| RP left | 25 | 0 | 0 | 7 | 0 | 0 |
| Reviewer 2 | ||||||
| Ia-V right | 14 | 11 | 0 | 4 | 3 | 0 |
| Ia-V left | 14 | 11 | 0 | 4 | 3 | 0 |
| Ib-V right | 14 | 11 | 0 | 4 | 3 | 0 |
| Ib-V left | 14 | 11 | 0 | 4 | 3 | 0 |
| II-IV right | 14 | 11 | 0 | 4 | 3 | 0 |
| II-IV left | 14 | 11 | 0 | 4 | 3 | 0 |
| RP right | 21 | 4 | 0 | 5 | 2 | 0 |
| RP left | 21 | 4 | 0 | 5 | 2 | 0 |
| Reviewer 3 | ||||||
| Ia-V right | 0 | 25 | 0 | 0 | 5 | 2 |
| Ia-V left | 0 | 24 | 1 | 0 | 7 | 0 |
| Ib-V right | 0 | 25 | 0 | 0 | 5 | 2 |
| Ib-V left | 1 | 23 | 1 | 0 | 7 | 0 |
| II-IV right | 2 | 23 | 0 | 0 | 6 | 1 |
| II-IV left | 4 | 21 | 0 | 1 | 6 | 0 |
| RP right | 9 | 16 | 0 | 1 | 6 | 0 |
| RP left | 11 | 14 | 0 | 2 | 5 | 0 |
Individual cases were reviewed on a slice-by-slice basis by 3 radiation oncologists each having more than 10 years of HNC experience.
Auto-segmentation scores: 1 = clinically acceptable without requiring edits; 2 = requiring minor edits (ie, stylistic recommendations, <2 minutes); 3 = requiring major edits.
Abbreviation: HNC = head and neck cancer.
Fig. 4.Example results from a randomly selected case from our test set. Twenty axial slices from a computed tomography scan of a 57-year-old male patient with base of tongue cancer show the auto-segmented lymph node target volumes. The axial slices are evenly sampled and distributed from the cranial extent of the retropharyngeal lymph nodes to the caudal extent of the level IV lymph node.
Fig. 5.Computed tomography images of 3 patients with auto-segmentations requiring minor edits. All 3 patients (1 per row) had their neck dissection before radiation therapy. In these cases, the auto-segmented volumes were undercontoured between lymph node levels II and III as shown in columns 2 and 3. Whereas target volumes for neck lymph node levels Ib-V are shown in this figure, auto-segmentations for levels II-IV and Ia-V were subject to similar undercontouring in these regions. RP node target volumes were unaffected in this clinical presentation.