Literature DB >> 33068482

Construction and validation of a database of head models for functional imaging of the neonatal brain.

Liam H Collins-Jones1,2, Tomoki Arichi3,4, Tanya Poppe3, Addison Billing1,5, Jiaxin Xiao3, Lorenzo Fabrizi6, Sabrina Brigadoi7,8, Jeremy C Hebden1,2, Clare E Elwell1, Robert J Cooper1,2.   

Abstract

The neonatal brain undergoes dramatic structural and functional changes over the last trimester of gestation. The accuracy of source localisation of brain activity recorded from the scalp therefore relies on accurate age-specific head models. Although an age-appropriate population-level atlas could be used, detail is lost in the construction of such atlases, in particular with regard to the smoothing of the cortical surface, and so such a model is not representative of anatomy at an individual level. In this work, we describe the construction of a database of individual structural priors of the neonatal head using 215 individual-level datasets at ages 29-44 weeks postmenstrual age from the Developing Human Connectome Project. We have validated a method to segment the extra-cerebral tissue against manual segmentation. We have also conducted a leave-one-out analysis to quantify the expected spatial error incurred with regard to localising functional activation when using a best-matching individual from the database in place of a subject-specific model; the median error was calculated to be 8.3 mm (median absolute deviation 3.8 mm). The database can be applied for any functional neuroimaging modality which requires structural data whereby the physical parameters associated with that modality vary with tissue type and is freely available at www.ucl.ac.uk/dot-hub.
© 2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.

Entities:  

Keywords:  atlas; database; neonatal; structural prior

Mesh:

Year:  2020        PMID: 33068482      PMCID: PMC7814762          DOI: 10.1002/hbm.25242

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  73 in total

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2.  Multi-contrast human neonatal brain atlas: application to normal neonate development analysis.

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Journal:  Neuroimage       Date:  2011-01-26       Impact factor: 6.556

3.  How short is short? Optimum source-detector distance for short-separation channels in functional near-infrared spectroscopy.

Authors:  Sabrina Brigadoi; Robert J Cooper
Journal:  Neurophotonics       Date:  2015-05-26       Impact factor: 3.593

4.  Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI.

Authors:  Archana K Singh; Masako Okamoto; Haruka Dan; Valer Jurcak; Ippeita Dan
Journal:  Neuroimage       Date:  2005-10-01       Impact factor: 6.556

5.  Changes of functional response in sensorimotor cortex of preterm and full-term infants during the first year: An fNIRS study.

Authors:  Suelen Rosa de Oliveira; Ana Carolina C P Machado; Jonas Jardim de Paula; Sérgio Luiz Novi; Rickson C Mesquita; Débora Marques de Miranda; Maria Cândida F Bouzada
Journal:  Early Hum Dev       Date:  2019-04-29       Impact factor: 2.079

6.  Unbiased average age-appropriate atlases for pediatric studies.

Authors:  Vladimir Fonov; Alan C Evans; Kelly Botteron; C Robert Almli; Robert C McKinstry; D Louis Collins
Journal:  Neuroimage       Date:  2010-07-23       Impact factor: 6.556

7.  Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies.

Authors:  Robert J Cooper; Matteo Caffini; Jay Dubb; Qianqian Fang; Anna Custo; Daisuke Tsuzuki; Bruce Fischl; William Wells; Ippeita Dan; David A Boas
Journal:  Neuroimage       Date:  2012-05-23       Impact factor: 6.556

8.  Somatosensory cortical activation identified by functional MRI in preterm and term infants.

Authors:  T Arichi; A Moraux; A Melendez; V Doria; M Groppo; N Merchant; S Combs; E Burdet; D J Larkman; S J Counsell; C F Beckmann; A D Edwards
Journal:  Neuroimage       Date:  2009-10-23       Impact factor: 6.556

9.  A dynamic 4D probabilistic atlas of the developing brain.

Authors:  Maria Kuklisova-Murgasova; Paul Aljabar; Latha Srinivasan; Serena J Counsell; Valentina Doria; Ahmed Serag; Ioannis S Gousias; James P Boardman; Mary A Rutherford; A David Edwards; Joseph V Hajnal; Daniel Rueckert
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10.  Infant brain atlases from neonates to 1- and 2-year-olds.

Authors:  Feng Shi; Pew-Thian Yap; Guorong Wu; Hongjun Jia; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  PLoS One       Date:  2011-04-14       Impact factor: 3.240

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  3 in total

1.  The Developing Human Connectome Project Neonatal Data Release.

Authors:  A David Edwards; Daniel Rueckert; Stephen M Smith; Samy Abo Seada; Amir Alansary; Jennifer Almalbis; Joanna Allsop; Jesper Andersson; Tomoki Arichi; Sophie Arulkumaran; Matteo Bastiani; Dafnis Batalle; Luke Baxter; Jelena Bozek; Eleanor Braithwaite; Jacqueline Brandon; Olivia Carney; Andrew Chew; Daan Christiaens; Raymond Chung; Kathleen Colford; Lucilio Cordero-Grande; Serena J Counsell; Harriet Cullen; John Cupitt; Charles Curtis; Alice Davidson; Maria Deprez; Louise Dillon; Konstantina Dimitrakopoulou; Ralica Dimitrova; Eugene Duff; Shona Falconer; Seyedeh-Rezvan Farahibozorg; Sean P Fitzgibbon; Jianliang Gao; Andreia Gaspar; Nicholas Harper; Sam J Harrison; Emer J Hughes; Jana Hutter; Mark Jenkinson; Saad Jbabdi; Emily Jones; Vyacheslav Karolis; Vanessa Kyriakopoulou; Gregor Lenz; Antonios Makropoulos; Shaihan Malik; Luke Mason; Filippo Mortari; Chiara Nosarti; Rita G Nunes; Camilla O'Keeffe; Jonathan O'Muircheartaigh; Hamel Patel; Jonathan Passerat-Palmbach; Maximillian Pietsch; Anthony N Price; Emma C Robinson; Mary A Rutherford; Andreas Schuh; Stamatios Sotiropoulos; Johannes Steinweg; Rui Pedro Azeredo Gomes Teixeira; Tencho Tenev; Jacques-Donald Tournier; Nora Tusor; Alena Uus; Katy Vecchiato; Logan Z J Williams; Robert Wright; Julia Wurie; Joseph V Hajnal
Journal:  Front Neurosci       Date:  2022-05-23       Impact factor: 5.152

2.  Construction and validation of a database of head models for functional imaging of the neonatal brain.

Authors:  Liam H Collins-Jones; Tomoki Arichi; Tanya Poppe; Addison Billing; Jiaxin Xiao; Lorenzo Fabrizi; Sabrina Brigadoi; Jeremy C Hebden; Clare E Elwell; Robert J Cooper
Journal:  Hum Brain Mapp       Date:  2020-10-17       Impact factor: 5.038

3.  Longitudinal infant fNIRS channel-space analyses are robust to variability parameters at the group-level: An image reconstruction investigation.

Authors:  Liam H Collins-Jones; Robert J Cooper; Chiara Bulgarelli; Anna Blasi; Laura Katus; Samantha McCann; Luke Mason; Ebrima Mbye; Ebou Touray; Mohammed Ceesay; Sophie E Moore; Sarah Lloyd-Fox; Clare E Elwell
Journal:  Neuroimage       Date:  2021-04-26       Impact factor: 6.556

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