| Literature DB >> 33065977 |
Ana Cvetko1, Domagoj Kifer1, Olga Gornik1,2, Lucija Klarić3, Elizabeth Visser4, Gordan Lauc1,2, James F Wilson3,5, Tamara Štambuk1,2.
Abstract
Multiple sclerosis (MS) is an inflammatory autoimmune disorder affecting the central nervous system (CNS), with unresolved aetiology. Previous studies have implicated N-glycosylation, a highly regulated enzymatic attachment of complex sugars to targeted proteins, in MS pathogenesis. We investigated individual variation in N-glycosylation of the total plasma proteome and of IgG in MS. Both plasma protein and IgG N-glycans were chromatographically profiled and quantified in 83 MS cases and 88 age- and sex-matched controls. Comparing levels of glycosylation features between MS cases and controls revealed that core fucosylation (p = 6.96 × 10-3) and abundance of high-mannose structures (p = 1.48 × 10-2) were the most prominently altered IgG glycosylation traits. Significant changes in plasma protein N-glycome composition were observed for antennary fucosylated, tri- and tetrasialylated, tri- and tetragalactosylated, high-branched N-glycans (p-value range 1.66 × 10-2-4.28 × 10-2). Classification performance of N-glycans was examined by ROC curve analysis, resulting in an AUC of 0.852 for the total plasma N-glycome and 0.798 for IgG N-glycome prediction models. Our results indicate that multiple aspects of protein glycosylation are altered in MS, showing increased proinflammatory potential. N-glycan alterations showed substantial value in classification of the disease status, nonetheless, additional studies are warranted to explore their exact role in MS development and utility as biomarkers.Entities:
Keywords: N-glycosylation; biomarkers; immunoglobulin G in inflammation; multiple sclerosis; plasma glycoproteins
Year: 2020 PMID: 33065977 PMCID: PMC7599553 DOI: 10.3390/biomedicines8100410
Source DB: PubMed Journal: Biomedicines ISSN: 2227-9059
Clinical characteristics of the study participants. 1
| Case | Control | ||
|---|---|---|---|
| Participants, N | 83 | 88 | |
| Sex, Nfemale (%) | 58 (70) | 62 (70) | 1.000 |
| Age, median (min-max) | 52 (29–77) | 50 (28–77) | 0.830 |
| Type of multiple sclerosis, N (%) | |||
| Relapsing remitting | 31 (37) | ||
| Secondary progressive with relapses | 25 (30) | ||
| Secondary progressive without relapses | 15 (18) | ||
| Primary progressive | 12 (14) | ||
| Expanded Disability Status Scale, median (IQR) | |||
| Relapsing remitting | 2.0 (1.0–4.5) | ||
| Secondary progressive with relapses | 6.0 (5.0–8.0) | ||
| Secondary progressive without relapses | 6.5 (6.0–7.5) | ||
| Primary progressive | 6.0 (6.0–7.5) | ||
1 Difference in sex was tested using Fisher-exact test, while difference in age was tested using Wilcoxon rank-sum test. IQR—interquartile range.
Figure 1Representative chromatograms of HILIC-UPLC-FLR profiled N-glycans. (a) IgG N-glycome profile with graphical representation of the glycan structures corresponding to every IgG glycan peak (IgGP). (b) Plasma protein N-glycome profile with graphical representation of the most abundant structures corresponding to every plasma glycan peak (GP).
Comparison of IgG and plasma protein initial glycan traits between subjects with MS and matched controls. 1
| Sample | Glycan Peak | Glycan Structure | Odds Ratio | 95% CI | Adjusted | |
|---|---|---|---|---|---|---|
| IgG | IgGP5 | M5 | 1.17 | 1.06–1.28 | 7.48 × 10−4 | 1.48 × 10−2 |
| IgG | IgGP9 | FA2[3]G1 | 0.92 | 0.88–0.96 | 6.38 × 10−4 | 1.48 × 10−2 |
| IgG | IgGP17 | FA2[3]BG1S1, A2G2S1 | 1.16 | 1.05–1.27 | 1.95 × 10−3 | 3.21 × 10−2 |
| IgG | IgGP21 | A2G2S2 | 1.24 | 1.09–1.38 | 3.78 × 10−4 | 1.48 × 10−2 |
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| plasma | GP4 | FA2[6]G1 | 0.90 | 0.84–0.97 | 4.19 × 10−3 | 3.57 × 10−2 |
| plasma | GP5 | FA2[3]G1 | 0.86 | 0.79–0.94 | 1.37 × 10−3 | 1.87 × 10−2 |
| plasma | GP10 | FA2G2 | 0.88 | 0.82–0.95 | 1.04 × 10−3 | 1.86 × 10−2 |
| plasma | GP27 | A3F1G3S2 | 1.18 | 1.06–1.31 | 1.67 × 10−3 | 1.93 × 10−2 |
| plasma | GP32 | A3G3S3 | 1.13 | 1.04–1.21 | 1.42 × 10−3 | 1.87 × 10−2 |
| plasma | GP33 | A3F1G3S3 | 1.20 | 1.08–1.33 | 6.12 × 10−4 | 1.66 × 10−2 |
| plasma | GP35 | FA3F1G3S3, A4F1G4S3 | 1.23 | 1.11–1.34 | 1.94 × 10−5 | 1.57 × 10−3 |
| plasma | GP38 | A4G4S4, A4F1G4S4 | 1.08 | 1.02–1.14 | 4.14 × 10−3 | 3.57 × 10−2 |
| plasma | GP39 | A4F1G4S4, A4F2G4S4 | 1.18 | 1.08–1.27 | 1.50 × 10−4 | 6.78 × 10−3 |
1 Differences are expressed as odds ratio values, resulting from post-hoc tests. Glycan data were adjusted for age and sex, while false discovery rate was controlled using Benjamini–Hochberg method. Only statistically significant results are shown.
Figure 2Most prominent differences between MS subjects and matched controls in IgG derived glycan traits. The left part of the figure shows boxplots representing differences in glycan abundances, while the right part shows odds ratio plots, resulting from post-hoc tests. Boxes in the boxplot are ranging from 25th to 75th percentile, with the median represented as a line inside the box. The whiskers of the boxplot extend from both percentiles, 75th percentile for upper whisker and 25th for lower whisker, to the values within 1.5 × IQR. IQR is the inter-quartile range, also known as the distance from the first to the third quartile. Data outside the whiskers’ ends are outliers, represented with black dots, and are plotted individually. On the odds ratio plots, middle dot represents odds ratio value for represented derived glycan trait surrounded by its 95% confidence interval (CI). Odds ratio of 1.0 means that there is no difference between compared groups for the given trait. Asterisk symbols represent statistical significance: * < 0.05; ** < 0.01.
Figure 3Most prominent differences between MS subjects and matched controls in plasma protein derived glycan traits. The left part of the figure shows boxplots representing differences in glycan abundances, while the right part shows odds ratio plots, resulting from post-hoc tests. Boxes in the boxplot are ranging from 25th to 75th percentile, with the median represented as a line inside the box. The whiskers of the boxplot extend from both percentiles, 75th percentile for upper whisker and 25th for lower whisker, to the values within 1.5 × IQR. IQR is the inter-quartile range, also known as the distance from the first to the third quartile. Data outside the whiskers’ ends are outliers, represented with black dots, and are plotted individually. On the odds ratio plots, middle dot represents odds ratio value for represented derived glycan trait surrounded by its 95% confidence interval (CI). Odds ratio of 1.0 means that there is no difference between compared groups for the given trait. Asterisk symbols represent statistical significance: * < 0.05; ** < 0.01.
Figure 4Classification performance of plasma protein and IgG N-glycome. ROC curves represent the performance of logistic regression model in classification of multiple sclerosis status using the total plasma protein N-glycome (a) and total IgG N-glycome (b). The blue line represents classification of disease status using the N-glycan model, while the black line represents performance of age and sex in disease status classification. Graphs are showing area under the curve (AUC) values with 95% confidence intervals.