| Literature DB >> 33059605 |
Xiangqian Ding1, Luyao Yang2, Xin Geng1, Yanghong Zou1, Zhigang Wang1, Yao Li1, Renli Qi1, Wei Wang1, Jinghui Li3,4, Hualin Yu5.
Abstract
BACKGROUND: An increasing number of studies have reported circular RNAs (circRNAs) as new potential biomarkers for the prognosis of gliomas. However, the overall prognostic value of circRNAs for glioma remains unclear. Therefore, this study is the first comprehensive evaluation of the clinicopathological and prognostic value of dysregulated circRNAs in the treatment of glioma patients.Entities:
Keywords: Circular RNA; Clinicopathology; Glioma; Meta-analysis; Prognosis
Mesh:
Substances:
Year: 2020 PMID: 33059605 PMCID: PMC7566033 DOI: 10.1186/s12885-020-07446-4
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Fig. 1Flowchart of the study selection process
The p values summary of the association between circRNAs and clinicopathological features
| Author (ref.) year | Country | CircRNA | Tumor type | Expression | Assay methods | Case | Cut-off value | Gender | Age | Tumor size (cm) | WHO grade | Tumor location | KPS | Family history |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Zhu [ | China | circBRAF | glioma | down-regulation | qRT-PCR | 68 | NA | 0.331 | 0.011 | 1(5) | < 0.001 | NA | 0.429 | NA |
| Wang [ | China | circ-0001649 | glioma | down-regulation | qRT-PCR | 64 | NA | 0.196 | 0.803 | 0.002(3) | 0.023 | 0.297 | NA | 0.474 |
| Qu [ | China | circ-0079593 | glioma | up-regulation | qRT-PCR | 60 | mean | 0.789 | 0.17 | 0.009(3) | 0.002 | 0.604 | NA | 0.506 |
| Lv [ | China | circ-EPB41L5 | GBM | down-regulation | qRT-PCR | 45 | median | 0.449 | 0.026 | 0.42(10cm3) | NA | NA | 0.279 | NA |
| Duan [ | China | circ-0074362 | glioma | up-regulation | qRT-PCR | 62 | NA | 0.806 | 0.074 | 0.04(4) | 0.005 | NA | NA | NA |
| Zhang [ | China | circ-0029426 | glioma | up-regulation | qRT-PCR | 59 | mean | 0.601 | 0.415 | 0.033(3) | 0.036 | 0.105 | NA | 0.741 |
| Yang [ | China | circ-POSTN | glioma | up-regulation | qRT-PCR | 58 | mean | 0.787 | 0.77 | 0.033(3) | 0.034 | 0.793 | NA | 0.505 |
| Yang [ | China | circ-0034642 | glioma | up-regulation | qRT-PCR | 68 | mean | 0.312 | 0.201 | 0.014(3) | 0.003 | 0.219 | NA | 0.356 |
| Wang [ | China | circ-0005198 | glioma | up-regulation | qRT-PCR | 44 | fold change | 0.51 | 0.698 | 0.014(3) | 0.012 | 0.543 | NA | 1 |
| Meng [ | China | circ-SCAF11 | glioma | up-regulation | qRT-PCR | 40 | NA | 0.612 | 0.153 | 0.015(3) | 0.178 | NA | 0.317 | NA |
| Lyu [ | China | circ-0013520 | glioma | up-regulation | qRT-PCR | 92 | mean | 0.747 | 0.511 | < 0.001(3) | 0.004 | NA | 0.008 | NA |
| Lyu [ | China | circ-0004379 | glioma | up-regulation | qRT-PCR | 92 | mean | 0.799 | 0.641 | < 0.001(3) | 0.005 | NA | 0.006 | NA |
| Lu [ | China | circ-0001730 | glioma | up-regulation | qRT-PCR | 99 | NA | 0.132 | 0.611 | NA | 0.004 | NA | NA | NA |
| Liu [ | China | circ-CDC45 | glioma | up-regulation | qRT-PCR | 50 | median | 0.561 | 0.321 | 0.016(3) | 0.01 | 0.571 | NA | 0.496 |
| Ding [ | China | circ-NFIX | glioma | up-regulation | qRT-PCR | 64 | NA | 0.4363 | 0.765 | 0.0262(3) | 0.0177 | NA | NA | NA |
| Chen [ | China | circ-0000177 | glioma | up-regulation | qRT-PCR | 62 | NA | 0.451 | 0.198 | 0.01(4) | 0.02 | NA | NA | NA |
| Chen [ | China | circ-0074026 | glioma | up-regulation | qRT-PCR | 60 | mean | 0.795 | 0.125 | 0.001(3) | 0.017 | 0.288 | NA | 0.731 |
| Zuo [ | China | circ-SMAD7 | glioma | up-regulation | qRT-PCR | 46 | NA | 0.309 | 0.978 | NA | 0.014 | NA | 0.0002 | NA |
| Zhan [ | China | circ-PITX1 | glioma | up-regulation | qRT-PCR | 52 | median | 0.765 | 0.541 | 0.023(3) | 0.025 | 0.406 | NA | 0.499 |
| Xie [ | China | circ-0012129 | glioma | up-regulation | qRT-PCR | 31 | NA | 0.578 | 0.551 | NA | 0.014 | NA | NA | NA |
| Qian [ | China | circ-0074027 | glioma | up-regulation | qRT-PCR | 50 | median | 0.529 | 0.345 | 0.045(3) | 0.021 | 0.158 | NA | 0.479 |
| Liu [ | China | circ-001350 | glioma | up-regulation | qRT-PCR | 53 | mean | 0.266 | 0.76 | 0.013(3) | 0.029 | 0.588 | NA | 0.392 |
| He [ | China | circ-MAPK4 | glioma | up-regulation | qRT-PCR | 30 | NA | 0.919 | 0.855 | 0.513(3) | 0.044 | NA | NA | NA |
qRT-PCR quantitative reverse transcription-polymerase chain reaction, NA not available, GBM glioblastoma multiforme
Main features of studies for prognosis analysis
| Author (ref.) year | Country | CircRNA | Tumor type | Expression | Assay methods | Case | Cut-offvalue | Tumor stage | High level | Low level | Survival analysis | HR | 95%CI | HR availability | Follow-up months |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Zhu [ | China | circ-BRAF | glioma | down-regulation | qRT-PCR | 68 | NA | grade(I-IV) | 33 | 35 | OS | 4.13 | 1.79–9.56 | K-M curve | 60 |
| Wang [ | China | circ-0001649 | glioma | down-regulation | qRT-PCR | 64 | NA | grade(I-IV) | 32 | 32 | OS | 2.012 | 1.012–4 | Reported | 60 |
| Qu [ | China | circ-0079593 | glioma | up-regulation | qRT-PCR | 60 | mean | grade(I-IV) | 30 | 30 | OS | 2.21 | 1.023–4.772 | Reported | 60 |
| Lv [ | China | circ-EPB41L5 | GBM | down-regulation | qRT-PCR | 45 | median | grade (IV) | 23 | 22 | OS | 3.401 | 1.388–8.88 | Reported | 45 |
| Duan [ | China | circ-0074362 | glioma | up-regulation | qRT-PCR | 62 | NA | grade(I-IV) | 30 | 32 | OS | 2.695 | 1.054–6.897 | Reported | 56 |
| Zhang [ | China | circ-0029426 | glioma | up-regulation | qRT-PCR | 59 | mean | grade(I-IV) | 31 | 28 | OS | 2.007 | 1.006–4.002 | Reported | 60 |
| Yang [ | China | circ-POSTN | glioma | up-regulation | qRT-PCR | 58 | mean | grade(I-IV) | 29 | 29 | OS | 2.1 | 0.74–5.91 | K-M curve | 60 |
| Yang [ | China | circ-0034642 | glioma | up-regulation | qRT-PCR | 68 | mean | grade(I-IV) | 36 | 32 | OS | 1.75 | 0.84–3.63 | K-M curve | 60 |
| Wang [ | China | circ-0005198 | glioma | up-regulation | qRT-PCR | 44 | fold change | grade(I-IV) | 22 | 22 | OS | 2.47 | 0.66–9.2 | K-M curve | 60 |
| Meng [ | China | circ-SCAF11 | glioma | up-regulation | qRT-PCR | 40 | NA | grade(I-IV) | 20 | 20 | OS | 1.64 | 0.59–4.59 | K-M curve | 60 |
| Lyu [ | China | circ-0013520 | glioma | up-regulation | qRT-PCR | 92 | mean | grade(I-IV) | 40 | 52 | OS | 1.85 | 0.98–3.48 | K-M curve | 31 |
| Lyu [ | China | circ-0004379 | glioma | up-regulation | qRT-PCR | 92 | mean | grade(I-IV) | 42 | 50 | OS | 1.65 | 0.87–3.11 | K-M curve | 30 |
| Lu [ | China | circ-0001730 | glioma | up-regulation | qRT-PCR | 99 | NA | grade(I-IV) | 49 | 50 | OS | 1.55 | 0.29–8.11 | K-M curve | 24 |
| Liu [ | China | circ-CDC45 | glioma | up-regulation | qRT-PCR | 50 | median | grade(I-IV) | 25 | 25 | OS | 1.78 | 0.9–3.55 | K-M curve | 60 |
| Ding [ | China | circ-NFIX | glioma | up-regulation | qRT-PCR | 64 | NA | grade(I-IV) | 36 | 28 | OS | 0.87 | 0.17–4.46 | K-M curve | 60 |
| Chen [ | China | circ-0000177 | glioma | up-regulation | qRT-PCR | 62 | NA | grade(I-IV) | 26 | 36 | OS | 2.05 | 0.52–8.1 | K-M curve | 60 |
| Chen [ | China | circ-0074026 | glioma | up-regulation | qRT-PCR | 60 | mean | grade(I-IV) | 30 | 30 | OS | 2.6 | 1.37–4.94 | K-M curve | 60 |
| Li [ | China | circ-ITCH | glioma | down-regulation | qRT-PCR | 60 | NA | grade(I-IV) | 31 | 29 | OS | 2.326 | 1.204–5.431 | Reported | 80 |
| Peng [ | China | circ-CPA4 | glioma | up-regulation | qRT-PCR | 73 | average | grade(I-IV) | 35 | 38 | OS | 3.98 | 1.23–12.94 | K-M curve | 42 |
HR hazard ratio, CI Confidence interval, qRT-PCR quantitative reverse transcription-polymerase chain reaction, NA not available, OS overall survival, K-M Kaplan-Meier
Meta-analysis results for circRNAs expression with clinicopathological features
| Tumor promoter | Tumor suppressor | |||
|---|---|---|---|---|
| OR (95% CI) | P value | OR (95% CI) | ||
| Gender (M/W) | 1.25 (0.99–1.58) | 0.061 | ||
| Age | ||||
| Tumor size | ||||
| Tumor grade (III + IV/I + II) | ||||
| Tumor location (Supra/Infra) | 1.22 (0.87–1.70) | 0.248 | 1.99 (0.7–5.62) | 0.195 |
| KPS | 0.98(0.19–4.99) | 0.981 | ||
| Family history of cancer (Y/N) | 1.43 (0.92–2.21) | 0.108 | 0.45 (0.1–1.98) | 0.289 |
OR odds ratio, CI confidence interval, M men, W women, Y yes, N no, the results are in bold if p < 0.05
Fig. 2Forest plots for overall survival according to the type of upregulated circRNAs and downregulated circRNAs in glioma patients
Fig. 3Sensitivity analysis and publication bias of the meta-analysis of circRNAs and the prognosis of patients with glioma. a Sensitivity analysis plot; b Funnel plot; c Begg’s funnel plot; d Egger’s funnel plot