Literature DB >> 30057200

The Biogenesis, Functions, and Challenges of Circular RNAs.

Xiang Li1, Li Yang2, Ling-Ling Chen3.   

Abstract

Covalently closed circular RNAs (circRNAs) are produced by precursor mRNA back-splicing of exons of thousands of genes in eukaryotes. circRNAs are generally expressed at low levels and often exhibit cell-type-specific and tissue-specific patterns. Recent studies have shown that their biogenesis requires spliceosomal machinery and can be modulated by both cis complementary sequences and protein factors. The functions of most circRNAs remain largely unexplored, but known functions include sequestration of microRNAs or proteins, modulation of transcription and interference with splicing, and even translation to produce polypeptides. However, challenges exist at multiple levels to understanding of the regulation of circRNAs because of their circular conformation and sequence overlap with linear mRNA counterparts. In this review, we survey the recent progress on circRNA biogenesis and function and discuss technical obstacles in circRNA studies.
Copyright © 2018 Elsevier Inc. All rights reserved.

Keywords:  RNA binding proteins; RNA-seq; back-splicing; biogenesis; circRNA; circular RNA; function; intronic complementary sequences; linear RNA; spliceosomal machinery

Mesh:

Substances:

Year:  2018        PMID: 30057200     DOI: 10.1016/j.molcel.2018.06.034

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  594 in total

1.  Characterization and Cloning of Grape Circular RNAs Identified the Cold Resistance-Related Vv-circATS1.

Authors:  Zhen Gao; Jing Li; Meng Luo; Hui Li; Qiuju Chen; Lei Wang; Shiren Song; Liping Zhao; Wenping Xu; Caixi Zhang; Shiping Wang; Chao Ma
Journal:  Plant Physiol       Date:  2019-04-08       Impact factor: 8.340

2.  Nuclear export mechanisms of circular RNAs: size does matter.

Authors:  Asfar S Azmi
Journal:  Noncoding RNA Investig       Date:  2018-09-14

Review 3.  Cellular and Molecular Mechanisms Underlying Prostate Cancer Development: Therapeutic Implications.

Authors:  Ugo Testa; Germana Castelli; Elvira Pelosi
Journal:  Medicines (Basel)       Date:  2019-07-30

4.  circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs.

Authors:  Li Chen; Feng Wang; Emily C Bruggeman; Chao Li; Bing Yao
Journal:  Bioinformatics       Date:  2020-01-15       Impact factor: 6.937

5.  Circbank: a comprehensive database for circRNA with standard nomenclature.

Authors:  Ming Liu; Qian Wang; Jian Shen; Burton B Yang; Xiangming Ding
Journal:  RNA Biol       Date:  2019-04-25       Impact factor: 4.652

6.  Circular RNA 0047905 acts as a sponge for microRNA4516 and microRNA1227-5p, initiating gastric cancer progression.

Authors:  Zhiyong Lai; Yang Yang; Chaobing Wang; Wenhui Yang; Yichao Yan; Zhu Wang; Jun Xu; Kewei Jiang
Journal:  Cell Cycle       Date:  2019-06-04       Impact factor: 4.534

7.  Circ_0114876 promoted IL-1β-induced chondrocyte injury by targeting miR-671/TRAF2 axis.

Authors:  Qiushi Wang; Simin Luo; Jie Yang; Jieruo Li; Songwei Huan; Guorong She; Zhengang Zha
Journal:  Biotechnol Lett       Date:  2021-01-06       Impact factor: 2.461

Review 8.  A narrative review of circular RNAs as potential biomarkers and therapeutic targets for cardiovascular diseases.

Authors:  Chi Liu; Nan Li; Guifeng Dai; Omer Cavdar; Hong Fang
Journal:  Ann Transl Med       Date:  2021-04

9.  Construction of ceRNA network and identification of two differentially expressed circRNAs in hepatocellular carcinoma by bioinformatic analysis.

Authors:  Hongwei He; Zhong Shen; Qiyun Gu; Rong Xie
Journal:  Int J Clin Exp Pathol       Date:  2020-11-01

10.  Altered expression of circular RNAs in human placental chorionic plate-derived mesenchymal stem cells pretreated with hypoxia.

Authors:  Xunsha Sun; Yulin Jin; Qihua Liang; Jie Tang; Jinsong Chen; Qiuxia Yu; Fatao Li; Yan Li; Jieying Wu; Shaoqing Wu
Journal:  J Clin Lab Anal       Date:  2018-11-28       Impact factor: 2.352

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