Literature DB >> 33047464

CRISPR/Cas-based precision genome editing via microhomology-mediated end joining.

Tien Van Vu1,2, Duong Thi Hai Doan1, Jihae Kim1, Yeon Woo Sung1, Mil Thi Tran1, Young Jong Song1, Swati Das1, Jae-Yean Kim1,3.   

Abstract

Gene editing and/or allele introgression with absolute precision and control appear to be the ultimate goals of genetic engineering. Precision genome editing in plants has been developed through various approaches, including oligonucleotide-directed mutagenesis (ODM), base editing, prime editing and especially homologous recombination (HR)-based gene targeting. With the advent of CRISPR/Cas for the targeted generation of DNA breaks (single-stranded breaks (SSBs) or double-stranded breaks (DSBs)), a substantial advancement in HR-mediated precise editing frequencies has been achieved. Nonetheless, further research needs to be performed for commercially viable applications of precise genome editing; hence, an alternative innovative method for genome editing may be required. Within this scope, we summarize recent progress regarding precision genome editing mediated by microhomology-mediated end joining (MMEJ) and discuss their potential applications in crop improvement.
© 2020 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Entities:  

Keywords:  CRISPR; DNA repair; MMEJ; PITCh; cas; microhomology; precision gene editing

Year:  2020        PMID: 33047464      PMCID: PMC7868975          DOI: 10.1111/pbi.13490

Source DB:  PubMed          Journal:  Plant Biotechnol J        ISSN: 1467-7644            Impact factor:   9.803


  117 in total

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Authors:  G Gheysen; R Villarroel; M Van Montagu
Journal:  Genes Dev       Date:  1991-02       Impact factor: 11.361

2.  In vivo gene correction with targeted sequence substitution through microhomology-mediated end joining.

Authors:  Jeong Hong Shin; Soobin Jung; Suresh Ramakrishna; Hyongbum Henry Kim; Junwon Lee
Journal:  Biochem Biophys Res Commun       Date:  2018-05-24       Impact factor: 3.575

3.  Mechanisms of nonhomologous recombination in mammalian cells.

Authors:  D B Roth; T N Porter; J H Wilson
Journal:  Mol Cell Biol       Date:  1985-10       Impact factor: 4.272

4.  Ionising radiation induces the expression of PARP-1 and PARP-2 genes in Arabidopsis.

Authors:  G Doucet-Chabeaud; C Godon; C Brutesco; G de Murcia; M Kazmaier
Journal:  Mol Genet Genomics       Date:  2001-08       Impact factor: 3.291

5.  The Mre11/Rad50/Nbs1 complex functions in resection-based DNA end joining in Xenopus laevis.

Authors:  Elaine M Taylor; Sophie M Cecillon; Antonio Bonis; J Ross Chapman; Lawrence F Povirk; Howard D Lindsay
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971

6.  Two different types of double-strand breaks in Saccharomyces cerevisiae are repaired by similar RAD52-independent, nonhomologous recombination events.

Authors:  K M Kramer; J A Brock; K Bloom; J K Moore; J E Haber
Journal:  Mol Cell Biol       Date:  1994-02       Impact factor: 4.272

7.  A Polymerase Theta-dependent repair pathway suppresses extensive genomic instability at endogenous G4 DNA sites.

Authors:  Wouter Koole; Robin van Schendel; Andrea E Karambelas; Jane T van Heteren; Kristy L Okihara; Marcel Tijsterman
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

8.  Arabidopsis DNA polymerase lambda mutant is mildly sensitive to DNA double strand breaks but defective in integration of a transgene.

Authors:  Tomoyuki Furukawa; Karel J Angelis; Anne B Britt
Journal:  Front Plant Sci       Date:  2015-05-27       Impact factor: 5.753

Review 9.  Precise Genome Modification via Sequence-Specific Nucleases-Mediated Gene Targeting for Crop Improvement.

Authors:  Yongwei Sun; Jingying Li; Lanqin Xia
Journal:  Front Plant Sci       Date:  2016-12-20       Impact factor: 5.753

10.  Cas12a mediates efficient and precise endogenous gene tagging via MITI: microhomology-dependent targeted integrations.

Authors:  Pan Li; Lijun Zhang; Zhifang Li; Chunlong Xu; Xuguang Du; Sen Wu
Journal:  Cell Mol Life Sci       Date:  2019-12-17       Impact factor: 9.261

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  6 in total

1.  CRISPR/Cas9-based precise excision of SlHyPRP1 domain(s) to obtain salt stress-tolerant tomato.

Authors:  Mil Thi Tran; Duong Thi Hai Doan; Jihae Kim; Young Jong Song; Yeon Woo Sung; Swati Das; Eun-Jung Kim; Geon Hui Son; Sang Hee Kim; Tien Van Vu; Jae-Yean Kim
Journal:  Plant Cell Rep       Date:  2020-10-19       Impact factor: 4.570

Review 2.  Sequence modification on demand: search and replace tools for precise gene editing in plants.

Authors:  Tomáš Čermák
Journal:  Transgenic Res       Date:  2021-06-04       Impact factor: 2.788

Review 3.  The Advance of CRISPR-Cas9-Based and NIR/CRISPR-Cas9-Based Imaging System.

Authors:  Huanhuan Qiao; Jieting Wu; Xiaodong Zhang; Jian Luo; Hao Wang; Dong Ming
Journal:  Front Chem       Date:  2021-12-16       Impact factor: 5.221

4.  Advances in S gene targeted genome-editing and its applicability to disease resistance breeding in selected Solanaceae crop plants.

Authors:  Geleta Dugassa Barka; Jundae Lee
Journal:  Bioengineered       Date:  2022-06       Impact factor: 6.832

5.  DNA methylation can alter CRISPR/Cas9 editing frequency and DNA repair outcome in a target-specific manner.

Authors:  Adéla Přibylová; Lukáš Fischer; Douglas E Pyott; Andrew Bassett; Attila Molnar
Journal:  New Phytol       Date:  2022-05-31       Impact factor: 10.323

Review 6.  CRISPR/Cas-based precision genome editing via microhomology-mediated end joining.

Authors:  Tien Van Vu; Duong Thi Hai Doan; Jihae Kim; Yeon Woo Sung; Mil Thi Tran; Young Jong Song; Swati Das; Jae-Yean Kim
Journal:  Plant Biotechnol J       Date:  2020-11-09       Impact factor: 9.803

  6 in total

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