Literature DB >> 33037962

Prospects of next generation sequencing in lentil breeding.

Jitendra Kumar1, Debjyoti Sen Gupta2.   

Abstract

Lentil is an important food legume crop that has large and complex genome. During past years, considerable attention has been given on the use of next generation sequencing for enriching the genomic resources including identification of SSR and SNP markers, development of unigenes, transcripts, and identification of candidate genes for biotic and abiotic stresses, analysis of genetic diversity and identification of genes/ QTLs for agronomically important traits. However, in other crops including pulses, next generation sequencing has revolutionized the genomic research and helped in genomic assisted breeding rapidly and cost effectively. The present review discuss current status and future prospects of the use NGS based breeding in lentil.

Entities:  

Keywords:  DNA sequencing; Functional markers; Genetic gain; Lentil; Pan-genome; Transcriptome; Unigenes

Mesh:

Year:  2020        PMID: 33037962     DOI: 10.1007/s11033-020-05891-9

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  71 in total

1.  Association of functional markers with flowering time in lentil.

Authors:  Jitendra Kumar; Sunanda Gupta; Revanappa S Biradar; Priyanka Gupta; Sonali Dubey; Narendra Pratap Singh
Journal:  J Appl Genet       Date:  2017-12-11       Impact factor: 3.240

2.  Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.

Authors:  Rajeev K Varshney; Chi Song; Rachit K Saxena; Sarwar Azam; Sheng Yu; Andrew G Sharpe; Steven Cannon; Jongmin Baek; Benjamin D Rosen; Bunyamin Tar'an; Teresa Millan; Xudong Zhang; Larissa D Ramsay; Aiko Iwata; Ying Wang; William Nelson; Andrew D Farmer; Pooran M Gaur; Carol Soderlund; R Varma Penmetsa; Chunyan Xu; Arvind K Bharti; Weiming He; Peter Winter; Shancen Zhao; James K Hane; Noelia Carrasquilla-Garcia; Janet A Condie; Hari D Upadhyaya; Ming-Cheng Luo; Mahendar Thudi; C L L Gowda; Narendra P Singh; Judith Lichtenzveig; Krishna K Gali; Josefa Rubio; N Nadarajan; Jaroslav Dolezel; Kailash C Bansal; Xun Xu; David Edwards; Gengyun Zhang; Guenter Kahl; Juan Gil; Karam B Singh; Swapan K Datta; Scott A Jackson; Jun Wang; Douglas R Cook
Journal:  Nat Biotechnol       Date:  2013-01-27       Impact factor: 54.908

Review 3.  Current knowledge in lentil genomics and its application for crop improvement.

Authors:  Shiv Kumar; Karthika Rajendran; Jitendra Kumar; Aladdin Hamwieh; Michael Baum
Journal:  Front Plant Sci       Date:  2015-02-23       Impact factor: 5.753

4.  Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea.

Authors:  Shouvik Das; Hari D Upadhyaya; Deepak Bajaj; Alice Kujur; Saurabh Badoni; Vinod Kumar; Shailesh Tripathi; C L Laxmipathi Gowda; Shivali Sharma; Sube Singh; Akhilesh K Tyagi; Swarup K Parida
Journal:  DNA Res       Date:  2015-04-27       Impact factor: 4.458

5.  Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan).

Authors:  Vikas K Singh; Aamir W Khan; Rachit K Saxena; Vinay Kumar; Sandip M Kale; Pallavi Sinha; Annapurna Chitikineni; Lekha T Pazhamala; Vanika Garg; Mamta Sharma; Chanda Venkata Sameer Kumar; Swathi Parupalli; Suryanarayana Vechalapu; Suyash Patil; Sonnappa Muniswamy; Anuradha Ghanta; Kalinati Narasimhan Yamini; Pallavi Subbanna Dharmaraj; Rajeev K Varshney
Journal:  Plant Biotechnol J       Date:  2015-09-23       Impact factor: 9.803

6.  QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.).

Authors:  Manish K Pandey; Aamir W Khan; Vikas K Singh; Manish K Vishwakarma; Yaduru Shasidhar; Vinay Kumar; Vanika Garg; Ramesh S Bhat; Annapurna Chitikineni; Pasupuleti Janila; Baozhu Guo; Rajeev K Varshney
Journal:  Plant Biotechnol J       Date:  2017-02-07       Impact factor: 9.803

7.  Transcriptome analysis of lentil (Lens culinaris Medikus) in response to seedling drought stress.

Authors:  Dharmendra Singh; Chandan Kumar Singh; Jyoti Taunk; Ram Sewak Singh Tomar; Ashish Kumar Chaturvedi; Kishor Gaikwad; Madan Pal
Journal:  BMC Genomics       Date:  2017-02-27       Impact factor: 3.969

8.  Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil.

Authors:  Andrew G Sharpe; Larissa Ramsay; Lacey-Anne Sanderson; Michael J Fedoruk; Wayne E Clarke; Rong Li; Sateesh Kagale; Perumal Vijayan; Albert Vandenberg; Kirstin E Bett
Journal:  BMC Genomics       Date:  2013-03-18       Impact factor: 3.969

9.  Mapping Late Leaf Spot Resistance in Peanut (Arachis hypogaea) Using QTL-seq Reveals Markers for Marker-Assisted Selection.

Authors:  Josh Clevenger; Ye Chu; Carolina Chavarro; Stephanie Botton; Albert Culbreath; Thomas G Isleib; C C Holbrook; Peggy Ozias-Akins
Journal:  Front Plant Sci       Date:  2018-02-05       Impact factor: 5.753

10.  QTL sequencing strategy to map genomic regions associated with resistance to ascochyta blight in chickpea.

Authors:  Amit Deokar; Mandeep Sagi; Ketema Daba; Bunyamin Tar'an
Journal:  Plant Biotechnol J       Date:  2018-07-04       Impact factor: 9.803

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  5 in total

Review 1.  Genomics Associated Interventions for Heat Stress Tolerance in Cool Season Adapted Grain Legumes.

Authors:  Jitendra Kumar; Reyazul Rouf Mir; Safoora Shafi; Debjyoti Sen Gupta; Ivica Djalovic; Jegor Miladinovic; Rahul Kumar; Sachin Kumar; Rajeev Kumar
Journal:  Int J Mol Sci       Date:  2021-12-30       Impact factor: 5.923

2.  Agro-Morphological Characterization of Lentil Germplasm of Indian National Genebank and Development of a Core Set for Efficient Utilization in Lentil Improvement Programs.

Authors:  Kuldeep Tripathi; Jyoti Kumari; Padmavati G Gore; Dwijesh C Mishra; Amit Kumar Singh; Gyan P Mishra; C Gayacharan; H K Dikshit; Neeta Singh; D P Semwal; Reena Mehra; Rakesh Bhardwaj; Ruchi Bansal; J C Rana; Ashok Kumar; Veena Gupta; Kuldeep Singh; Ashutosh Sarker
Journal:  Front Plant Sci       Date:  2022-01-27       Impact factor: 5.753

Review 3.  Genetic Augmentation of Legume Crops Using Genomic Resources and Genotyping Platforms for Nutritional Food Security.

Authors:  Romesh K Salgotra; Charles Neal Stewart
Journal:  Plants (Basel)       Date:  2022-07-18

4.  Complete chloroplast genome sequence of Lens ervoides and comparison to Lens culinaris.

Authors:  Nurbanu Tayşi; Yasin Kaymaz; Duygu Ateş; Hatice Sari; Cengiz Toker; M Bahattin Tanyolaç
Journal:  Sci Rep       Date:  2022-09-05       Impact factor: 4.996

Review 5.  Entailing the Next-Generation Sequencing and Metabolome for Sustainable Agriculture by Improving Plant Tolerance.

Authors:  Muhammad Furqan Ashraf; Dan Hou; Quaid Hussain; Muhammad Imran; Jialong Pei; Mohsin Ali; Aamar Shehzad; Muhammad Anwar; Ali Noman; Muhammad Waseem; Xinchun Lin
Journal:  Int J Mol Sci       Date:  2022-01-07       Impact factor: 5.923

  5 in total

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