| Literature DB >> 33029696 |
Pravindra Kumar1, Ashok Kumar Sah2, Greesham Tripathi3, Avantika Tripathi3, Anjali Kashyap4, Rashmi Rao1, Prabhu C Mishra3, Koustav Mallick5, Amjad Husain6,7, Manoj Kumar Kashyap8.
Abstract
Since the first case reports in Wuhan, China, the SARS-CoV-2 has caused a pandemic and took lives of > 8,35,000 people globally. This single-stranded RNA virus uses Angiotensin-converting enzyme 2 (ACE2) as a receptor for entry into the host cell. Overexpression of ACE2 is mainly observed in hypertensive, diabetic and heart patients that make them prone to SARS-CoV-2 infection. Mitigations strategies were opted globally by the governments to minimize transmission of SARS-CoV-2 via the implementation of social distancing norms, wearing the facemasks, and spreading awareness using digital platforms. The lack of an approved drug treatment regimen, and non-availability of a vaccine, collectively posed a challenge for mankind to fight against the SARS-CoV-2 pandemic. In this scenario, repurposing of existing drugs and old treatment options like convalescent plasma therapy can be one of the potential alternatives to treat the disease. The drug repurposing provides a selection of drugs based on the scientific rationale and with a shorter cycle of clinical trials, while plasma isolated from COVID-19 recovered patients can be a good source of neutralizing antibody to provide passive immunity. In this review, we provide in-depth analysis on these two approaches currently opted all around the world to treat COVID-19 patients. For this, we used "Boolean Operators" such as AND, OR & NOT to search relevant research articles/reviews from the PUBMED for the repurposed drugs and the convalescent plasma in the COVID-19 treatment. The repurposed drugs like Chloroquine and Hydroxychloroquine, Tenofovir, Remdesivir, Ribavirin, Darunavir, Oseltamivir, Arbidol (Umifenovir), Favipiravir, Anakinra, and Baricitinib are already being used in clinical trials to treat the COVID-19 patients. These drugs have been approved for a different indication and belong to a diverse category such as anti-malarial/anti-parasitic, anti-retroviral/anti-viral, anti-cancer, or against rheumatoid arthritis. Although, the vaccine would be an ideal option for providing active immunity against the SARS-CoV-2, but considering the current situation, drug repurposing and convalescent plasma therapy and repurposed drugs are the most viable option against SARS-CoV-2.Entities:
Keywords: ARDS; Cytokine storm syndrome; Herd immunity; Rheumatoid arthritis; Vaccine nationalism; Vertical transmission
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Year: 2020 PMID: 33029696 PMCID: PMC7539757 DOI: 10.1007/s11010-020-03924-2
Source DB: PubMed Journal: Mol Cell Biochem ISSN: 0300-8177 Impact factor: 3.396
Fig. 1Classification of RNA-based viruses and flow-chart showing the belongingness of Coronavirus and other closely related RNA viruses. This schematic classification of the Coronaviridae family shows how the members are divided based on sense and anti-sense strands. SARS-CoV-2 falls in category of single stranded sense strand RNA virus that is enveloped and possesses helical capsid. The α-coronaviruses are: 229E and NL63. Except SARS-CoV-2, there are other members of the β-coronavirus types are: OC43, HKU1, SARS-CoV, and MERS-CoV
Fig. 2Structure of the SARS-CoV-2 virus. An RNA virus, SARS-CoV-2 consists of an envelope (E), membrane (M), spike (S), and nucleocapsid (N) proteins. The RNA is single positive-sense strand. Among those, M, S and E are glycoproteins in nature. The viral nucleo-capsid is made of proteinaceous coat capsid, inside which RNA and non-histone protein reside. SARS-CoV-2 also contains shorter spikes that possess hemagglutinin-esterase (HE) protein; their size is larger in case of Toroviruses
Fig. 3Protein architecture of ACE2, TMPRSS2, and DPP4. a TMPRSS2 is a protease which consists of four domains LDLA, SR, TRYPSIN, and TM domain (b) ACE2, an enzyme possess one TM domain and one signal peptide, c DPP4 or CD26 is a protease which contains one signal peptide
Fig. 4ACE2 Expression across major normal human organs. The RNAseq derived data shows expression of ACE2 transcript across different organs including colon, duodenum, gall bladder, heart, kidney, liver, lung, small intestine, stomach, testis and thyroid. The value of expression is shown in form of Reads Per Kilobase of transcript, per million mapped reads (RPKM), which is a normalized unit for denoting transcript expression
Fig. 5Major sites of ACE2 expression, Binding of SARS-CoV-2 to ACE2 receptor, and involvement of TMPRSS2, and DPP4 in SARS-CoV-2 entry. The spike protein (S) helps SARS-CoV-2 to enter into the host cell via binding to its receptor Angiotensin Converting Enzyme 2 (ACE2) that is part of the renin–angiotensin–aldosterone system (RAAS). RAAS and its component include angiotensinogen (AGT), the enzyme renin, angiotensin converting enzyme (ACE), and their hydrolytic products angiotensins I and II. Once SARS-CoV-2 binds to ACE2, it internalize through the process of endocytosis into the cells, which leads to downregulation of membrane-anchored ACE2. A decrease in ACE2 levels led to organ damage via activation and deactivation of ACE/Ang II/AT1R & ACE2/Ang-(1–7)/Mas-R pathways, respectively. There is alternate route of infection of SARS-CoV-2 is via transmembrane protease serine 2 (TMPRSS2) driven cleavage of SARS-CoV-2 escorted through ACE2. Due to this membrane shedding of ACE2 occurs by disintegrin and MMP17. Furthermore, soluble form of ACE2 obstructs SARS-CoV-2 from binding to membrane-anchored ACE2 in plasma membrane. An increased amount of soluble ACE2 and expression induced due to RAS inhibitors could be advantageous for protecting lungs and other organ injury but not infection with SARS-CoV-2
List of mitigation strategies in form of do’s and don’ts to stop transmission of SARS-CoV-2
| S. no. | Parameter | Don'ts | Do's | Mechanism | References |
|---|---|---|---|---|---|
| 1 | Smoking | ✔ | Smoking have increased expression of ACE2 receptor in the host cells infected by the SARS-CoV-2 virus | Brake et al. [ | |
| 2 | PPE (medical professional) | ✔ | Personal protection equipment kit is very essential for health care personnel to wear specially those dealing with nCoV-19 patients/suspects | Giwa et al. [ | |
| 3 | Face mask | ✔ | SARS-CoV-2 spreads through droplets or aerosol so a proper mask is required to stop spreading transmission of SARS-CoV-2 virus. N95 masks have penetration size from 0.1 to 0.3 micron. Facemasks prevent spreading of droplets coming in cough and sneezing | Tirupathi et al. [ | |
| 4 | Hand sanitization | ✔ | The cleaning and washing hands with alcohol or with soap and water must be done or 20–30 s. Methanol, isopropyl alcohol and ethanol are major disinfectant agents. Ethanol concentration between 60 and 95% (v/v) is safe and effective for disinfection | Berardi et al. [ | |
| 5 | Social/physical distancing | ✔ | Maintain a social distance of at least 2 m or ~ 6 feet is required to avoid infection | MacIntyre et al. [ | |
| 6 | Visit of Crowded places | ✔ | Gathering is a good source to spread or getting infection with SARS-CoV-2 virus because at crowded places it is hard to maintain a social or physical distance of 2 m (6 feet). Social distancing is crucial in preventing community transmission | Wilder-Smith et al. [ | |
| 7 | Touching eyes, nose, and mouth | ✔ | The virus transmission can be through infected person’s airways/droplets (Aerosol), nose or mouth to recipient’s eyes, mouth or nose. Touching surface with bare hands can caught viral infection | West et al. [ | |
| 8 | Updating of information | ✔ | It is of utmost importance to keep up to date on the latest information from trusted sources, such as WHO or your local and national health authorities as they provides the most updated information/advise that need to follow in the area they are residing during the pandemic | Santos et al. [ | |
| 9 | Alcoholic sanitizers to be out of reach | ✔ | It is poisonous and must be out of children’s reach of children as they have more probability of accidental swallowing and ingestion. Reported health effects after swallowing are drowsiness, eye irritation, nausea, vomiting, etc. Methanol is very toxic and may prove life threatening sometimes. Alcohol vapor is also harmful | Santos et al. [ | |
| 10 | Sharing of cup, utensils, food, or drink items | ✔ | It transmits infection | Müller et al. [ | |
| 11 | Stay home | ✔ | The measures by which transmission can be reduced are; rules on distance and hygiene to prohibitions on meetings and extension of school and university holidays to the closure of all non-system-relevant facilities in a country in connection with the regulation of individual freedom of movement i.e. lockdown | Adhikari et al. [ | |
| 12 | Namaste | ✔ | This way of greeting avoids physical touch as observed in hand shaking | Kulkarni et al. [ | |
| 13 | Hugs, handshake, high five, fist bump,, & | ✔ | If individuals will go for these types of greetings or mode of celebration, transmission of virus will happen | Adhikari et al. [ | |
| 14 | COVID-19 associated app provided by the government | ✔ | It’s always good to upload COVID-19 app on your mobile to know latest update as well as COVID-19 positive patient in the vicinity | Ming et al. [ | |
| 15 | Make a note of helpline number of emergency medical facility | ✔ | In case if you submit the symptoms such as fever, difficulty in breathing and cough. This put stats accordingly if you are at high or low risk of getting the disease, and further in tracing and monitoring of the patient | Collado-Borrell et al. [ |
Fig. 6Schema for screening of the articles reporting drugs repurposed for COVID-19 The NCBI search engine was searched using Boolean operators such as AND, NOT, & OR. The articles were fetched for repurposing drugs, synergism or convalescent plasma in combination with COVID-19. The articles were further segregated based on the agent used for drug repurposing
Titer ratio among different studies where Convalescent plasma has been used as a treatment option for COVID-19 patients
| Region/country | Titer | Patient received CP | Patient outcome | References |
|---|---|---|---|---|
| Dongguan, Xiangtan, Xiaolan cities of China | > 1:320 | 06 | The patients treated with CP did not require mechanical ventilation and 11 days post-CP treatment were transferred to a general ward | Zhang et al. [ |
| Shenzhen, China | Antibody against anti-SARS-CoV-2 AB > 1:1000, and neutralization titer > 40 | 05 | Anti-SARS-CoV-2 antibody titers ranged between 1:800 and 16:200, NAbs titers from 80 to 480, reduced the viral load | Shen et al. [ |
| Wuhan, China | Neutralizing Anti-SARS-CoV-2 AB > ~ 1:640 | 10 | Reduced the viral load | Duan et al. [ |
| Wuhan, China | Not mentioned | 06 | An instant accretion in titer of anti‐SARS‐CoV‐2 AB titers in patients #2 and #3 | Ye et al. [ |
| South Korea | Not mentioned | 02 | Convalescent plasma therapy was given to two COVID-19 patients. Both showed a favorable outcome | Ahn et al. [ |
| Italy | ≥ 1:160 | 46 | Primary outcome was 7-days hospital mortality and 6.5% patients died within 7 days | Perotti et al. [ |
The drugs repurposed to treat COVID-19, their mode, molecule targeted and possible mechanism of action (wherever applicable)
| Name of the agent (mode of giving to the patients) | Type | Originally used for the diseases | Target & mode/mechanism of action | References |
|---|---|---|---|---|
| Baricitinib (oral) | Active ingredient of Olumiant | Rheumatoid arthritis | Reversible JAK inhibitor | Kuriya et al. [ |
| Favipiravir (an oral anti-viral drug) | Analogue of purine origin | Influenza | RdRp catalytic site preventing virus replication, It is erroneously concede as purine nucleotide by the RdRp | Furata et al. [ |
| EIDD-2801 (an oral anti-viral drug) | Ribonucleotide analog, it is isopropylester prodrug of [N4-hydroxycytidine] | Tested in influenza, MERS-CoV, | Same enzyme targeted by remdesivir. EIDD-2801 mimics cytidine, and uridine | Sheahan et al. [ |
| Oseltamivir (orally administered drug) | Sialidase inhibitor | Influenza A and B | Neuraminidase | Oliveira et al. [ |
| Remdesivir (intravenously) | An adenosine analogue | Flu virus (influenza) | Targets viral RNA polymerase via incorporation of adenosine analogue in the nascent RNA chain using viral RdRp | Eastman et al. [ |
| Methylprednisolone (oral) | A corticosteroid | Diminish pro-inflammatory cytokines | Binds to nuclear receptor | Lu et al. [ |
| Tofacitinib (oral) | An-acylpiperidines | Psoriatic arthritis and rheumatoid arthritis | Selective JAK1 & JAK3 inhibitor, inhibits CYP3A4 | Emori et al. [ |
| Ruxolitinib (oral) | Apyrrolo [2,3-d]pyrimidines | High-risk myelofibrosis | Inhibitor of JAK1 & JAK2 | Elli et al. [ |
| Chloroquine | Anaminoquinolone derivative | Malaria, HIV, Q fever, Whipple's disease | Inhibits caspase-1 (CASP1), NLRP3. CQ escalates the pH of the endosomes as well as impede the glycosylation of some receptors | Oscanoa et al. [ |
| Hydroxychloroquine (oral) | 4-Aminoquinoline | Malaria, Rheumatoid arthritis and Lupus | ALDH1 and QR2. The mechanism of action is very similar to CQ | Graves et al. [ |
| Oseltamivir (oral) | Anti-viral neuraminidase inhibitor | Influenza A & B | Neuraminidases, Ion channels of nicotinic acetylcholine receptors | O'Hanlon et al. [ |
| Lopinavir (oral) | Anti-retroviral protease inhibitor | HIV | Mimetic Protease that impede viral protease activity | De Clercq [ Paskas et al. [ |
| Ruxolitinib (oral) | Cancer growth blocker | Myelofibrosis | Janus Kinase inhibitor (JAK inhibitor) with selectivity for subtypes JAK1 and JAK2 | Mesa [ |
| Carolacton | Macrolide keto-carboxilic acid (A natural product Bio-film inhibitor Isolated from | Antibacterial | FoID/MTHFD | Fu et al. [ |
| Ivermectin (oral and tropical) | Macrocyclic lactones | Parasite infestations (Head lice, Scabies, Onchocerciasis, Strongyloidiasis, trichuriasis, ascariasis and lymphatic filariasis | Activates glutamate—gated Cl− channels Cys -loop receptor, P2X4 receptor, fernesoid X receptors | Chen et al. [ |
| Darunavir (oral) | Anti-retroviral protease inhibitor | Binds to the active site of HIV-1 protease, and inhibits the dimerization and catalytic activity of HIV-1 protease | Target wild-type HIV-1 protease | Li et al. [ |
| Ritonavir (oral) | An anti-retroviral protease inhibitor | HIV | HIV replication cycle after translation and before assembly | McEvoy et al. [ |
| CamostatMesylate (oral) | Potent serine protease inhibitor | Pancreatitis, and esophagitis | TMPRSS2 | Kumar et al. [ |
| Fedratinib (oral) | JAK2-selective kinase inhibitor | Mylofibrosis | JAK2 | Pardanani et al. [ |
| Baloxavir (oral) | Cap-dependent endonuclease inhibitor | Influenza A and B | Polymerase complex of influenza virus | Ng et al. [ |
| Arbidol | An Indole derivative | Influenza | Spike glycoprotein, capable of impeding virus-mediated fusion, and entry of virus into target cells | Zhang et al. [ |
| Anakinra (subcutaneous) | Antagonist of IL1R | Rheumatoid arthritis | IL1R | Huet et al. [ |
Fig. 7The chemical structure of the repurposed drugs for treatment of the COVID-19 patients. A number of drugs including anti-malarial/anti-parasitic (Chloroquine, hydroxychloroquine, and emetine), anti-myelofibrosis (Ruxolitinib), anti-viral/anti-retroviral (Tenofovir, Lopinavir, Ritonavir, Baloxavir, Remdesivir, Ribavirin, Darunavir, Oseltamivir, Arbidol, and Favipiravir), and anti-rheumatoid arthritis (Anakinra, Barcitinib, Methylprednisolone, Naproxene, and Tofacitinib) are the drugs that have been extensively in use for the treatment of COVID-19 patients