Literature DB >> 32225176

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor.

Jun Lan1, Jiwan Ge1, Jinfang Yu1, Sisi Shan2, Huan Zhou3, Shilong Fan1, Qi Zhang2, Xuanling Shi2, Qisheng Wang3, Linqi Zhang4, Xinquan Wang5.   

Abstract

A new and highly pathogenic coronavirus (severe acute respiratory syndrome coronavirus-2SARS-CoV-2) caused an outbreak in Wuhan city, Hubei province, China, starting from December 2019 that quickly spread nationwide and to other countries around the world1-3. Here, to better understand the initial step of infection at an atomic level, we determined the crystal structure of the receptor-binding domain (RBD) of the spike protein of SARS-CoV-2 bound to the cell receptor ACE2. The overall ACE2-binding mode of the SARS-CoV-2 RBD is nearly identical to that of the SARS-CoV RBD, which also uses ACE2 as the cell receptor4. Structural analysis identified residues in the SARS-CoV-2 RBD that are essential for ACE2 binding, the majority of which either are highly conserved or share similar side chain properties with those in the SARS-CoV RBD. Such similarity in structure and sequence strongly indicate convergent evolution between the SARS-CoV-2 and SARS-CoV RBDs for improved binding to ACE2, although SARS-CoV-2 does not cluster within SARS and SARS-related coronaviruses1-3,5. The epitopes of two SARS-CoV antibodies that target the RBD are also analysed for binding to the SARS-CoV-2 RBD, providing insights into the future identification of cross-reactive antibodies.

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Year:  2020        PMID: 32225176     DOI: 10.1038/s41586-020-2180-5

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  1754 in total

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Journal:  JCI Insight       Date:  2020-07-23

2.  Design of a highly thermotolerant, immunogenic SARS-CoV-2 spike fragment.

Authors:  Sameer Kumar Malladi; Randhir Singh; Suman Pandey; Savitha Gayathri; Kawkab Kanjo; Shahbaz Ahmed; Mohammad Suhail Khan; Parismita Kalita; Nidhi Girish; Aditya Upadhyaya; Poorvi Reddy; Ishika Pramanick; Munmun Bhasin; Shailendra Mani; Sankar Bhattacharyya; Jeswin Joseph; Karthika Thankamani; V Stalin Raj; Somnath Dutta; Ramandeep Singh; Gautham Nadig; Raghavan Varadarajan
Journal:  J Biol Chem       Date:  2020-11-23       Impact factor: 5.157

3.  Humoral and circulating follicular helper T cell responses in recovered patients with COVID-19.

Authors:  Jennifer A Juno; Hyon-Xhi Tan; Stephen J Kent; Adam K Wheatley; Wen Shi Lee; Arnold Reynaldi; Hannah G Kelly; Kathleen Wragg; Robyn Esterbauer; Helen E Kent; C Jane Batten; Francesca L Mordant; Nicholas A Gherardin; Phillip Pymm; Melanie H Dietrich; Nichollas E Scott; Wai-Hong Tham; Dale I Godfrey; Kanta Subbarao; Miles P Davenport
Journal:  Nat Med       Date:  2020-07-13       Impact factor: 53.440

4.  Neutralizing nanobodies bind SARS-CoV-2 spike RBD and block interaction with ACE2.

Authors:  Jiandong Huo; Audrey Le Bas; Reinis R Ruza; Helen M E Duyvesteyn; Halina Mikolajek; Tomas Malinauskas; Tiong Kit Tan; Pramila Rijal; Maud Dumoux; Philip N Ward; Jingshan Ren; Daming Zhou; Peter J Harrison; Miriam Weckener; Daniel K Clare; Vinod K Vogirala; Julika Radecke; Lucile Moynié; Yuguang Zhao; Javier Gilbert-Jaramillo; Michael L Knight; Julia A Tree; Karen R Buttigieg; Naomi Coombes; Michael J Elmore; Miles W Carroll; Loic Carrique; Pranav N M Shah; William James; Alain R Townsend; David I Stuart; Raymond J Owens; James H Naismith
Journal:  Nat Struct Mol Biol       Date:  2020-07-13       Impact factor: 15.369

5.  The Global Phosphorylation Landscape of SARS-CoV-2 Infection.

Authors:  Mehdi Bouhaddou; Danish Memon; Bjoern Meyer; Kris M White; Veronica V Rezelj; Miguel Correa Marrero; Benjamin J Polacco; James E Melnyk; Svenja Ulferts; Robyn M Kaake; Jyoti Batra; Alicia L Richards; Erica Stevenson; David E Gordon; Ajda Rojc; Kirsten Obernier; Jacqueline M Fabius; Margaret Soucheray; Lisa Miorin; Elena Moreno; Cassandra Koh; Quang Dinh Tran; Alexandra Hardy; Rémy Robinot; Thomas Vallet; Benjamin E Nilsson-Payant; Claudia Hernandez-Armenta; Alistair Dunham; Sebastian Weigang; Julian Knerr; Maya Modak; Diego Quintero; Yuan Zhou; Aurelien Dugourd; Alberto Valdeolivas; Trupti Patil; Qiongyu Li; Ruth Hüttenhain; Merve Cakir; Monita Muralidharan; Minkyu Kim; Gwendolyn Jang; Beril Tutuncuoglu; Joseph Hiatt; Jeffrey Z Guo; Jiewei Xu; Sophia Bouhaddou; Christopher J P Mathy; Anna Gaulton; Emma J Manners; Eloy Félix; Ying Shi; Marisa Goff; Jean K Lim; Timothy McBride; Michael C O'Neal; Yiming Cai; Jason C J Chang; David J Broadhurst; Saker Klippsten; Emmie De Wit; Andrew R Leach; Tanja Kortemme; Brian Shoichet; Melanie Ott; Julio Saez-Rodriguez; Benjamin R tenOever; R Dyche Mullins; Elizabeth R Fischer; Georg Kochs; Robert Grosse; Adolfo García-Sastre; Marco Vignuzzi; Jeffery R Johnson; Kevan M Shokat; Danielle L Swaney; Pedro Beltrao; Nevan J Krogan
Journal:  Cell       Date:  2020-06-28       Impact factor: 41.582

6.  Genetic Characteristics and Phylogeny of 969-bp S Gene Sequence of SARS-CoV-2 from Hawai'i Reveals the Worldwide Emerging P681H Mutation.

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Review 7.  Molecular biology of coronaviruses: current knowledge.

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Journal:  Heliyon       Date:  2020-08-17

8.  Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes.

Authors:  Tongqing Zhou; I-Ting Teng; Adam S Olia; Gabriele Cerutti; Jason Gorman; Alexandra Nazzari; Wei Shi; Yaroslav Tsybovsky; Lingshu Wang; Shuishu Wang; Baoshan Zhang; Yi Zhang; Phinikoula S Katsamba; Yuliya Petrova; Bailey B Banach; Ahmed S Fahad; Lihong Liu; Sheila N Lopez Acevedo; Bharat Madan; Matheus Olivera de Souza; Xiaoli Pan; Pengfei Wang; Jacy R Wolfe; Michael Yin; David D Ho; Emily Phung; Anthony DiPiazza; Lauren Chang; Olubukula Abiona; Kizzmekia S Corbett; Brandon J DeKosky; Barney S Graham; John R Mascola; John Misasi; Tracy Ruckwardt; Nancy J Sullivan; Lawrence Shapiro; Peter D Kwong
Journal:  SSRN       Date:  2020-07-21

9.  Convalescent plasma anti-SARS-CoV-2 spike protein ectodomain and receptor-binding domain IgG correlate with virus neutralization.

Authors:  Eric Salazar; Suresh V Kuchipudi; Paul A Christensen; Todd Eagar; Xin Yi; Picheng Zhao; Zhicheng Jin; S Wesley Long; Randall J Olsen; Jian Chen; Brian Castillo; Christopher Leveque; Dalton Towers; Jason Lavinder; Jimmy Gollihar; Jose Cardona; Gregory Ippolito; Ruth Nissly; Ian Bird; Denver Greenawalt; Randall M Rossi; Abhinay Gontu; Sreenidhi Srinivasan; Indira Poojary; Isabella M Cattadori; Peter J Hudson; Nicole M Josleyn; Laura Prugar; Kathleen Huie; Andrew Herbert; David W Bernard; John M Dye; Vivek Kapur; James M Musser
Journal:  J Clin Invest       Date:  2020-12-01       Impact factor: 14.808

10.  Epithelial-mesenchymal transition induced by SARS-CoV-2 required transcriptional upregulation of Snail.

Authors:  Yun-Ju Lai; Chi-Hong Chao; Chun-Che Liao; Te-An Lee; Jung-Mao Hsu; Wen-Cheng Chou; Jyun Wang; Hsiang-Chi Huang; Shing-Jyh Chang; Yi-Ling Lin; Chia-Wei Li
Journal:  Am J Cancer Res       Date:  2021-05-15       Impact factor: 6.166

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