Literature DB >> 33017669

From start to end: Phase separation and transcriptional regulation.

Liu Peng1, En-Min Li2, Li-Yan Xu3.   

Abstract

Phase separation is the basis for the formation of membrane-less organelles in cells and is involved in many biological processes. Many biological macromolecules, such as proteins and nucleic acids, exert their biological functions by forming phase-separated condensates, and phase separation is closely related to various human diseases. Gene transcriptional regulation is an indispensable part of gene expression and normal function in cells. Its abnormal regulation often causes the occurrence of different diseases. In recent years, the occurrence of phase separation during transcriptional regulation has become an area of intense research. This review summarizes the process of phase separation involved in heterochromatin formation and chromatin remodeling, transcriptional regulation and post-transcriptional regulation. It provides a reference for understanding gene regulation during cell identity and disease development.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Chromatin remodeling; Heterochromatin formation; Phase separation; Post-transcriptional regulation; Transcriptional regulation

Mesh:

Substances:

Year:  2020        PMID: 33017669     DOI: 10.1016/j.bbagrm.2020.194641

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gene Regul Mech        ISSN: 1874-9399            Impact factor:   4.490


  14 in total

Review 1.  Phase separation of low-complexity domains in cellular function and disease.

Authors:  Jiwon Lee; Hana Cho; Ilmin Kwon
Journal:  Exp Mol Med       Date:  2022-09-29       Impact factor: 12.153

2.  Premature transcription termination at the expanded GAA repeats and aberrant alternative polyadenylation contributes to the Frataxin transcriptional deficit in Friedreich's ataxia.

Authors:  Yanjie Li; Jixue Li; Jun Wang; Siyuan Zhang; Keith Giles; Thazha P Prakash; Frank Rigo; Jill S Napierala; Marek Napierala
Journal:  Hum Mol Genet       Date:  2022-10-10       Impact factor: 5.121

Review 3.  Joining the PARty: PARP Regulation of KDM5A during DNA Repair (and Transcription?).

Authors:  Anthony Sanchez; Bethany A Buck-Koehntop; Kyle M Miller
Journal:  Bioessays       Date:  2022-05-09       Impact factor: 4.653

4.  The perinuclear region concentrates disordered proteins with predicted phase separation distributed in a 3D network of cytoskeletal filaments and organelles.

Authors:  Mariana Juliani do Amaral; Ivone de Andrade Rosa; Sarah Azevedo Andrade; Xi Fang; Leonardo Rodrigues Andrade; Manoel Luis Costa; Claudia Mermelstein
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2021-10-14       Impact factor: 5.011

Review 5.  Oncogenic fusion proteins and their role in three-dimensional chromatin structure, phase separation, and cancer.

Authors:  Ivana Y Quiroga; Jeong Hyun Ahn; Gang Greg Wang; Douglas Phanstiel
Journal:  Curr Opin Genet Dev       Date:  2022-04-12       Impact factor: 4.665

Review 6.  SUMO and Transcriptional Regulation: The Lessons of Large-Scale Proteomic, Modifomic and Genomic Studies.

Authors:  Mathias Boulanger; Mehuli Chakraborty; Denis Tempé; Marc Piechaczyk; Guillaume Bossis
Journal:  Molecules       Date:  2021-02-05       Impact factor: 4.411

Review 7.  Regulation of Eukaryotic RNAPs Activities by Phosphorylation.

Authors:  Araceli González-Jiménez; Adrián Campos; Francisco Navarro; Andrés Clemente-Blanco; Olga Calvo
Journal:  Front Mol Biosci       Date:  2021-06-25

Review 8.  Nuclear Protein Condensates and Their Properties in Regulation of Gene Expression.

Authors:  Wei Li; Hao Jiang
Journal:  J Mol Biol       Date:  2021-07-14       Impact factor: 6.151

Review 9.  Modulation of Phase Separation by RNA: A Glimpse on N6-Methyladenosine Modification.

Authors:  Yingfeng Su; Yasen Maimaitiyiming; Lingfang Wang; Xiaodong Cheng; Chih-Hung Hsu
Journal:  Front Cell Dev Biol       Date:  2021-12-10

Review 10.  Connecting primitive phase separation to biotechnology, synthetic biology, and engineering.

Authors:  Tony Z Jia; Po-Hsiang Wang; Tatsuya Niwa; Irena Mamajanov
Journal:  J Biosci       Date:  2021       Impact factor: 1.826

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