| Literature DB >> 33016647 |
Grant M Fischer1,2, Fernando C L Carapeto1, Aron Y Joon3, Lauren E Haydu4, Huiqin Chen3, Fuchenchu Wang3, John S Van Arnam1, Jennifer L McQuade2, Khalida Wani1, John M Kirkwood5, John F Thompson6,7,8, Michael T Tetzlaff1,9, Alexander J Lazar1,9,10, Hussein A Tawbi2, Jeffrey E Gershenwald4, Richard A Scolyer6,7,8, Georgina V Long6,7,11, Michael A Davies1,2,12.
Abstract
Elevated serum lactate dehydrogenase (sLDH) is associated with poor clinical outcomes in patients with stage IV metastatic melanoma (MM). It is currently unknown if sLDH elevation correlates with distinct molecular, metabolic, or immune features of melanoma metastases. The identification of such features may identify rational therapeutic strategies for patients with elevated sLDH. Thus, we obtained sLDH levels for melanoma patients with metastases who had undergone molecular and/or immune profiling. Our analysis of multi-omics data from independent cohorts of melanoma metastases showed that elevated sLDH was not significantly associated with differences in immune cell infiltrate, point mutations, DNA copy number variations, promoter methylation, RNA expression, or protein expression in melanoma metastases. The only significant association observed for elevated sLDH was with the number of metastatic sites of disease. Our data support that sLDH correlates with disease burden, but not specific molecular or immunological phenotypes, in metastatic melanoma.Entities:
Keywords: melanoma; molecular profiling; serum lactate dehydrogenase; tumor immunity; tumor metabolism
Year: 2020 PMID: 33016647 PMCID: PMC7666738 DOI: 10.1002/cam4.3474
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
Figure 1Summary of samples available for molecular profiling. (A) Flowchart diagram illustrating how samples were selected from the Skin Cutaneous Melanoma (SKCM) TCGA. (B‐C) Flowchart diagrams illustrating how distant metastasis samples were selected for analysis via tissue microarray (TMA) and NanoString. MD Anderson, The University of Texas MD Anderson Cancer Center; MIA, Melanoma Institute of Australia.
Figure 2Serum LDH does not associate with molecular or immune features in locoregional melanoma metastases. (A) Volcano plot of limma‐modeled gene expression data between sLDH Elevated (n = 22) and sLDH Not Elevated (n = 82) TCGA locoregional metastases. The data for all genes are plotted as log2FC vs. the −log10 of the adjusted p value. No gene met the criteria for statistical significance (│log2FC│ >1 and adj. p value <0.05). (B) Comparison of LDHA and LDHB gene expression between sLDH Elevated and sLDH Not Elevated TCGA locoregional metastases. Voom‐transformed log2‐counts per million (CPM) values of the LDHA and LDHB genes are plotted on the y‐axis. Lines represent mean ±S.D. Each dot represents a single sample. (C) Bar plot of the ‐log10(FDR q‐value) of the top 20 MSigDB Hallmarks gene sets from the comparative GSEA analysis of sLDH Elevated and sLDH Not Elevated TCGA locoregional metastases. Gene sets are ordered in descending order of their ‐log10(FDR q‐value). No gene set met the criteria for statistical significance, shown on the graph as a dashed vertical line (FDR q‐value <0.05). (D) ESTIMATE ImmuneScore analysis of sLDH Elevated vs. sLDH Not Elevated TCGA locoregional metastases. Lines represent mean ±S.D., and each dot represents a single sample. Significance determined via two‐sided Student's t test. (E) MCP‐Counter analysis of sLDH Elevated vs. sLDH Not Elevated TCGA locoregional metastases. Each plot is a simple box and whisker plot. Median values (lines) and interquartile range (whiskers) are indicated. ns: not significant (p > 0.05) by two‐sided Student's t test.
Total Number of Metastatic Sites in TMA Patients
| # Metastatic Sites | Serum LDH (n = 109) | Fisher test | |
|---|---|---|---|
| Elevated (n = 34) | Not Elevated (n = 75) | ||
| ≥ 3 | 16 | 7 | <0.0001 |
| ≥ 4 | 10 | 4 | 0.0011 |
| ≥ 5 | 7 | 2 | 0.0038 |
The cumulative number of metastatic sites confirmed in TMA patients within 30 days of sLDH assessment were compared between patients with elevated sLDH (n = 34) and patients without elevated sLDH (n = 75). Significantly more patients with elevated sLDH had a high metastatic burden, regardless of the threshold used to define “high metastatic burden” (at least 3, 4, or 5 sites of metastasis).
Melanoma TMA Results of Categorically Scored Markers
| Marker | Serum LDH |
| Adj. | |||
|---|---|---|---|---|---|---|
| Elevated n (%) | Not Elevated n (%) | |||||
| LDHA | ||||||
| 0 | 3 (9) | 13 (17) | ||||
| 1 | 23 (68) | 51 (68) | 0.3314 | 0.8837 | ||
| 2 | 8 (24) | 11 (15) | ||||
| Total | 34 | 75 | ||||
| LDHB | ||||||
| 0 | 0 (0) | 2 (3) | ||||
| 1 | 5 (20) | 9 (16) | 0.9078 | 1 | ||
| 2 | 20 (80) | 47 (81) | ||||
| Total | 25 | 58 | ||||
| PTEN | ||||||
| Absent | 11 (32) | 11 (15) | 0.0415 | 0.3320 | ||
| Total | 34 | 75 | ||||
| PD‐L1 clone 28‐8 | ||||||
| Positive (>5%) | 8 (24) | 10 (13) | 0.2643 | 1 | ||
| Total | 34 | 75 | ||||
| PD‐L1 clone 22C3 | ||||||
| Positive (>1%) | 11 (32) | 18 (24) | 0.3614 | 0.7228 | ||
| Total | 34 | 75 | ||||
The TMA analysis did not identify significant intratumoral alterations (adj. p value <0.05) in any of the listed markers between sLDH Elevated and sLDH Not Elevated distant metastases. Each marker is listed along with the scoring mechanism used for the analysis. Scores for samples are listed along with the total number of samples analyzed by each marker. Only markers scored categorically are included in the table.
Figure 3Serum LDH does not associate with TMA markers evaluated as continuous variables in distant melanoma metastases. Ki67, MITF, and CD8 positivity do not differ between distant metastases acquired from patients with elevated sLDH and distant metastases taken from patients without elevated sLDH. Lines represent mean ±S.D., and each dot represents a single sample. Significance determined via two‐sided Student's t test.
Figure 4Serum LDH does not associate with metabolic features in distant melanoma metastases. (A) Volcano plot of normalized NanoString nCounter Vantage 3D Cancer Metabolism Panel gene expression data for 12 distant melanoma metastases from patients with elevated sLDH and 12 distant melanoma metastases from patients without elevated sLDH. The data for all genes are plotted as log2FC vs. the −log10 of the adjusted p value. No gene met the criteria for statistical significance (│log2FC│ >1 and adj. p value <0.05). (B) PCA plot analysis of normalized NanoString nCounter Vantage 3D Cancer Metabolism Panel gene expression data. No obvious grouping was observed. (C) Pathway analysis of NanoString nCounter Vantage 3D Cancer Metabolism Panel gene expression data. Increasing pathway scores correspond to increasing expression. Lines represent mean ±S.D., and each dot represents a single sample. Significance determined via two‐sided Student's t test. No pathway met the criteria for statistical significance (p < 0.05).
Figure 5Serum LDH does not associate with immune features in distant melanoma metastases. (A) Volcano plot of normalized NanoString nCounter PanCancer Immune Profiling Panel gene expression data from 12 distant melanoma metastases from patients with elevated sLDH and 12 distant melanoma metastases from patients without elevated sLDH. The data for all genes are plotted as log2FC vs. the −log10 of the adjusted p value. No gene met the criteria for statistical significance (│log2FC│ >1 and adj. p value <0.05). (B) Intratumoral immune cell analysis of sLDH Elevated (n = 12) and sLDH Not Elevated (n = 12) distant melanoma metastases. Each plot is a simple box and whisker plot. Median values (lines) and interquartile range (whiskers) are indicated. ns: not significant (p.adj>0.05) by two‐sided Student's t test. (C) Pathway analysis of NanoString nCounter PanCancer Immune Profiling Panel gene expression data. Hierarchical clustering analysis failed to identify obvious grouping between sLDH Elevated (n = 12) and sLDH Not Elevated samples (n = 12).