| Literature DB >> 32999294 |
Ritu Tyagi1, Kiran Maan1, Subash Khushu2, Poonam Rana3.
Abstract
The radiological incidents and terrorism have demanded the need for the development of rapid, precise, and non-invasive technique for detection and quantification of exposed dose of radiation. Though radiation induced metabolic markers have been thoroughly investigated, but reproducibility still needs to be elucidated. The present study aims at assessing the reliability and reproducibility of markers using nuclear magnetic resonance (NMR) spectroscopy and further deriving a logistic regression model based on these markers. C57BL/6 male mice (8-10 weeks) whole body γ-irradiated and sham irradiated controls were used. Urine samples collected at 24 h post dose were investigated using high resolution NMR spectroscopy and the datasets were analyzed using multivariate analysis. Fifteen distinguishable metabolites and 3 metabolic pathways (TCA cycle, taurine and hypotaurine metabolism, primary bile acid biosynthesis) were found to be amended. ROC curve and logistic regression was used to establish a diagnostic model as Logit (p) = log (p/1 - p) = -0.498 + 13.771 (tau) - 3.412 (citrate) - 34.461 (α-KG) + 515.183 (fumarate) with a sensitivity and specificity of 1.00 and 0.964 respectively. The findings demonstrate the proof of concept and the potential of NMR based metabolomics to establish a prediction model that can be implemented as a promising mass screening tool during triage.Entities:
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Year: 2020 PMID: 32999294 PMCID: PMC7527994 DOI: 10.1038/s41598-020-72426-4
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Multivariate analysis derived from 1H NMR spectra of urine sample from control and irradiated animals. (a) PCA score plot, (b) OPLS- DA score plot, (c) OPLS-DA validation plot (permutation times n = 100) and (d) The OPLS-DA derived corresponding S-plot.
List of 15 Key metabolites responsible for discriminating irradiated and control group.
| Metabolites | HMDB ID | VIPb | Rc | Fold changed | |
|---|---|---|---|---|---|
| Taurine | HMDB0000251 | 3.49 × 10−15 | 1.70 | 0.85 | 0.31 |
| Citrate | HMDB0000094 | 1.74 × 10−13 | 1.58 | − 0.83 | 2.54 |
| Creatine | HMDB0000064 | 5.08 × 10−12 | 1.69 | 0.77 | 0.29 |
| αKG | HMDB0000208 | 1.63 × 10−13 | 1.66 | − 0.75 | 3.49 |
| Fumarate | HMDB0000134 | 6.37 × 10−15 | 2.00 | − 0.70 | 4.69 |
| Succinate | HMDB0000254 | 4.62 × 10−12 | 1.47 | − 0.69 | 2.40 |
| Choline | HMDB0000097 | 1.84 × 10−08 | 0.86 | 0.69 | 0.62 |
| Creatinine | HMDB0000562 | 6.13 × 10−05 | 0.55 | 0.54 | 0.84 |
| Glycine | HMDB0000123 | 1.41 × 10−04 | 0.66 | 0.52 | 0.71 |
| Phenylalanine | HMDB0000159 | 1.35 × 10−03 | 0.65 | 0.48 | 0.75 |
| Pyruvate | HMDB0000243 | 5.22 × 10−03 | 0.74 | 0.45 | 0.80 |
| TMAO | HMDB0000925 | 1.42 × 10−03 | 0.75 | 0.42 | 0.71 |
| Branched amino acids (BAA) | HMDB0000687 ( | 2.10 × 10−03 | 0.49 | 0.40 | 0.86 |
| TMA | HMDB0000906 | 2.15 × 10−03 | 0.82 | − 0.40 | 1.53 |
| N-Acetyl glycoprotein | HMDB0000215 | 1.38 × 10−02 | 0.40 | 0.40 | 0.88 |
ap values were derived from two-tailed Student’s t test.
bVariable Importance in the projection (VIP) was obtained from OPLS DA with a threshold of 1.0
cCorrelation coefficient was obtained from OPLS DA with a threshold of 1.0
dPositive values indicate higher levels in irradiated group and negative values indicate lower levels in irradiated group.
Prediction models from the logistic regression and the ROC analysis results of the combined (a) and individual metabolites (b).
| Prediction models | AUC | SEa | 95% CIb | Youden index (J) | Sensitivity | Specificity | |
|---|---|---|---|---|---|---|---|
| P1 | 0.989 | 0.0084 | 0.916–1.00 | 0.891 | 96.3 | 92.86 | |
| P2 | 0.995 | 0.0058 | 0.925–1.00 | 0.963 | 96.3 | 100.00 | |
| P3 | 0.997 | 0.0032 | 0.930–1.00 | 0.963 | 96.3 | 100.00 | |
| P4 | 0.999 | 0.0018 | 0.933–1.00 | 0.964 | 100.00 | 96.4 | |
aStandard error.
bConfidence interval.
Figure 2The ROC analysis results from the four prediction models calculated from the logistic regression analysis. The diagnostic performance of each biomarker model was assessed by the area under the ROC curve (AUC) and the determination of sensitivity and specificity at the optimal cut-off was determined using the Youden index (J). The optimized model was the P4 model with an AUC of 0.999 (95% CI 0.933–1.00).
Figure 3Metabolic pathway mapping of the impacted metabolic network identified between control and irradiated group. The χ-axis represents the pathway impact, and the y-axis represents the − log (p).