Literature DB >> 32989250

LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury.

Shuhei Nakamura1,2,3, Saki Shigeyama4,5, Satoshi Minami6, Takayuki Shima4,5, Shiori Akayama4,5, Tomoki Matsuda7, Alessandra Esposito8, Gennaro Napolitano8,9, Akiko Kuma4,5, Tomoko Namba-Hamano6, Jun Nakamura6, Kenichi Yamamoto10, Miwa Sasai11,12, Ayaka Tokumura4,5, Mika Miyamoto4,5, Yukako Oe4,5, Toshiharu Fujita4,5, Seigo Terawaki13, Atsushi Takahashi6, Maho Hamasaki4,5, Masahiro Yamamoto11,12, Yukinori Okada10, Masaaki Komatsu14, Takeharu Nagai7, Yoshitsugu Takabatake6, Haoxing Xu15, Yoshitaka Isaka6, Andrea Ballabio8,9,16,17,18, Tamotsu Yoshimori19,20,21.   

Abstract

Sensing and clearance of dysfunctional lysosomes is critical for cellular homeostasis. Here we show that transcription factor EB (TFEB)-a master transcriptional regulator of lysosomal biogenesis and autophagy-is activated during the lysosomal damage response, and its activation is dependent on the function of the ATG conjugation system, which mediates LC3 lipidation. In addition, lysosomal damage triggers LC3 recruitment on lysosomes, where lipidated LC3 interacts with the lysosomal calcium channel TRPML1, facilitating calcium efflux essential for TFEB activation. Furthermore, we demonstrate the presence and importance of this TFEB activation mechanism in kidneys in a mouse model of oxalate nephropathy accompanying lysosomal damage. A proximal tubule-specific TFEB-knockout mouse exhibited progression of kidney injury induced by oxalate crystals. Together, our results reveal unexpected mechanisms of TFEB activation by LC3 lipidation and their physiological relevance during the lysosomal damage response.

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Year:  2020        PMID: 32989250     DOI: 10.1038/s41556-020-00583-9

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.213


  40 in total

1.  LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.

Authors:  Y Kabeya; N Mizushima; T Ueno; A Yamamoto; T Kirisako; T Noda; E Kominami; Y Ohsumi; T Yoshimori
Journal:  EMBO J       Date:  2000-11-01       Impact factor: 11.598

2.  Spatiotemporally controlled induction of autophagy-mediated lysosome turnover.

Authors:  Yu-Hsien Hung; Lily Man-Wen Chen; Jin-Yi Yang; Wei Yuan Yang
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 3.  The role of Atg proteins in autophagosome formation.

Authors:  Noboru Mizushima; Tamotsu Yoshimori; Yoshinori Ohsumi
Journal:  Annu Rev Cell Dev Biol       Date:  2011-07-18       Impact factor: 13.827

4.  The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis.

Authors:  Agnes Roczniak-Ferguson; Constance S Petit; Florian Froehlich; Sharon Qian; Jennifer Ky; Brittany Angarola; Tobias C Walther; Shawn M Ferguson
Journal:  Sci Signal       Date:  2012-06-12       Impact factor: 8.192

5.  Autophagy sequesters damaged lysosomes to control lysosomal biogenesis and kidney injury.

Authors:  Ikuko Maejima; Atsushi Takahashi; Hiroko Omori; Tomonori Kimura; Yoshitsugu Takabatake; Tatsuya Saitoh; Akitsugu Yamamoto; Maho Hamasaki; Takeshi Noda; Yoshitaka Isaka; Tamotsu Yoshimori
Journal:  EMBO J       Date:  2013-08-06       Impact factor: 11.598

6.  A gene network regulating lysosomal biogenesis and function.

Authors:  Marco Sardiello; Michela Palmieri; Alberto di Ronza; Diego Luis Medina; Marta Valenza; Vincenzo Alessandro Gennarino; Chiara Di Malta; Francesca Donaudy; Valerio Embrione; Roman S Polishchuk; Sandro Banfi; Giancarlo Parenti; Elena Cattaneo; Andrea Ballabio
Journal:  Science       Date:  2009-06-25       Impact factor: 47.728

7.  MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB.

Authors:  Jose A Martina; Yong Chen; Marjan Gucek; Rosa Puertollano
Journal:  Autophagy       Date:  2012-05-11       Impact factor: 16.016

8.  TFEB links autophagy to lysosomal biogenesis.

Authors:  Carmine Settembre; Chiara Di Malta; Vinicia Assunta Polito; Moises Garcia Arencibia; Francesco Vetrini; Serkan Erdin; Serpil Uckac Erdin; Tuong Huynh; Diego Medina; Pasqualina Colella; Marco Sardiello; David C Rubinsztein; Andrea Ballabio
Journal:  Science       Date:  2011-05-26       Impact factor: 47.728

9.  A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB.

Authors:  Carmine Settembre; Roberto Zoncu; Diego L Medina; Francesco Vetrini; Serkan Erdin; SerpilUckac Erdin; Tuong Huynh; Mathieu Ferron; Gerard Karsenty; Michel C Vellard; Valeria Facchinetti; David M Sabatini; Andrea Ballabio
Journal:  EMBO J       Date:  2012-02-17       Impact factor: 11.598

10.  Rag GTPases mediate amino acid-dependent recruitment of TFEB and MITF to lysosomes.

Authors:  Jose A Martina; Rosa Puertollano
Journal:  J Cell Biol       Date:  2013-02-11       Impact factor: 10.539

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  37 in total

1.  α-Synuclein fibrils subvert lysosome structure and function for the propagation of protein misfolding between cells through tunneling nanotubes.

Authors:  Aysegul Dilsizoglu Senol; Maura Samarani; Sylvie Syan; Carlos M Guardia; Takashi Nonaka; Nalan Liv; Patricia Latour-Lambert; Masato Hasegawa; Judith Klumperman; Juan S Bonifacino; Chiara Zurzolo
Journal:  PLoS Biol       Date:  2021-07-20       Impact factor: 8.029

2.  Material properties of phase-separated TFEB condensates regulate the autophagy-lysosome pathway.

Authors:  Zheng Wang; Di Chen; Dongshi Guan; Xiaobo Liang; Jianfeng Xue; Hongyu Zhao; Guangtao Song; Jizhong Lou; Yan He; Hong Zhang
Journal:  J Cell Biol       Date:  2022-03-16       Impact factor: 10.539

Review 3.  Past, present, and future perspectives of transcription factor EB (TFEB): mechanisms of regulation and association with disease.

Authors:  Anderson Tan; Renuka Prasad; Chaerin Lee; Eek-Hoon Jho
Journal:  Cell Death Differ       Date:  2022-06-23       Impact factor: 12.067

4.  Puerarin prevents calcium oxalate crystal-induced renal epithelial cell autophagy by activating the SIRT1-mediated signaling pathway.

Authors:  Guan-Hua Jing; Ya-Dong Liu; Jian-Nan Liu; Yin-Shan Jin; Shi-Liang Yu; Rui-Hua An
Journal:  Urolithiasis       Date:  2022-08-01       Impact factor: 2.861

5.  Autophagy-independent function of lipidated LC3 essential for TFEB activation during the lysosomal damage responses.

Authors:  Shuhei Nakamura; Shiori Akayama; Tamotsu Yoshimori
Journal:  Autophagy       Date:  2020-11-13       Impact factor: 16.016

6.  Transcription factor EB promotes rheumatoid arthritis of Sprague-Dawley rats via regulating autophagy.

Authors:  De Lai Xu; Jie Pan
Journal:  3 Biotech       Date:  2021-03-09       Impact factor: 2.406

7.  Autophagy: mechanisms and applications-a session at the 20th IUPAB congress/45th SBBf annual meeting/50th SBBq annual meeting.

Authors:  Marcelo A Mori
Journal:  Biophys Rev       Date:  2021-11-12

8.  Quantitative proteomics reveals the selectivity of ubiquitin-binding autophagy receptors in the turnover of damaged lysosomes by lysophagy.

Authors:  Vinay V Eapen; Sharan Swarup; Melissa J Hoyer; Joao A Paulo; J Wade Harper
Journal:  Elife       Date:  2021-09-29       Impact factor: 8.140

Review 9.  Autophagy in inflammation, infection, and immunometabolism.

Authors:  Vojo Deretic
Journal:  Immunity       Date:  2021-03-09       Impact factor: 31.745

10.  DNA demethylase Tet2 suppresses cisplatin-induced acute kidney injury.

Authors:  Yinwu Bao; Mengqiu Bai; Huanhuan Zhu; Yuan Yuan; Ying Wang; Yunjing Zhang; Junni Wang; Xishao Xie; Xi Yao; Jianhua Mao; Xianghui Fu; Jianghua Chen; Yi Yang; Weiqiang Lin
Journal:  Cell Death Discov       Date:  2021-06-17
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