Literature DB >> 32989164

Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers.

Jun Xu1, Wei Wang1, Liang Xu1, Jia-Yu Chen2, Jenny Chong1, Juntaek Oh1, Andres E Leschziner2,3, Xiang-Dong Fu2, Dong Wang4,2.   

Abstract

While loss-of-function mutations in Cockayne syndrome group B protein (CSB) cause neurological diseases, this unique member of the SWI2/SNF2 family of chromatin remodelers has been broadly implicated in transcription elongation and transcription-coupled DNA damage repair, yet its mechanism remains largely elusive. Here, we use a reconstituted in vitro transcription system with purified polymerase II (Pol II) and Rad26, a yeast ortholog of CSB, to study the role of CSB in transcription elongation through nucleosome barriers. We show that CSB forms a stable complex with Pol II and acts as an ATP-dependent processivity factor that helps Pol II across a nucleosome barrier. This noncanonical mechanism is distinct from the canonical modes of chromatin remodelers that directly engage and remodel nucleosomes or transcription elongation factors that facilitate Pol II nucleosome bypass without hydrolyzing ATP. We propose a model where CSB facilitates gene expression by helping Pol II bypass chromatin obstacles while maintaining their structures.

Entities:  

Keywords:  Cockayne syndrome; RNA polymerase II; chromatin remodeling; nucleosome bypass; transcription elongation

Mesh:

Substances:

Year:  2020        PMID: 32989164      PMCID: PMC7568279          DOI: 10.1073/pnas.2013379117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  61 in total

1.  Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro.

Authors:  Benjamin G Kuryan; Jessica Kim; Nancy Nga H Tran; Sarah R Lombardo; Swaminathan Venkatesh; Jerry L Workman; Michael Carey
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

2.  Histone chaperone FACT action during transcription through chromatin by RNA polymerase II.

Authors:  Fu-Kai Hsieh; Olga I Kulaeva; Smita S Patel; Pamela N Dyer; Karolin Luger; Danny Reinberg; Vasily M Studitsky
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

3.  Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase.

Authors:  Christopher M Weber; Srinivas Ramachandran; Steven Henikoff
Journal:  Mol Cell       Date:  2014-03-06       Impact factor: 17.970

4.  p300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation.

Authors:  W L Kraus; J T Kadonaga
Journal:  Genes Dev       Date:  1998-02-01       Impact factor: 11.361

5.  Nucleolin is a histone chaperone with FACT-like activity and assists remodeling of nucleosomes.

Authors:  Dimitar Angelov; Vladimir A Bondarenko; Sébastien Almagro; Hervé Menoni; Fabien Mongélard; Fabienne Hans; Flore Mietton; Vasily M Studitsky; Ali Hamiche; Stefan Dimitrov; Philippe Bouvet
Journal:  EMBO J       Date:  2006-04-06       Impact factor: 11.598

6.  ATP-dependent chromatin remodeling by the Cockayne syndrome B DNA repair-transcription-coupling factor.

Authors:  E Citterio; V Van Den Boom; G Schnitzler; R Kanaar; E Bonte; R E Kingston; J H Hoeijmakers; W Vermeulen
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

7.  Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II.

Authors:  C P Selby; A Sancar
Journal:  J Biol Chem       Date:  1997-01-17       Impact factor: 5.157

8.  The CSB protein actively wraps DNA.

Authors:  Nancy Beerens; Jan H J Hoeijmakers; Roland Kanaar; Wim Vermeulen; Claire Wyman
Journal:  J Biol Chem       Date:  2004-11-16       Impact factor: 5.157

9.  FACT caught in the act of manipulating the nucleosome.

Authors:  Yang Liu; Keda Zhou; Naifu Zhang; Hui Wei; Yong Zi Tan; Zhening Zhang; Bridget Carragher; Clinton S Potter; Sheena D'Arcy; Karolin Luger
Journal:  Nature       Date:  2019-11-27       Impact factor: 49.962

10.  Regulation of the RNAPII Pool Is Integral to the DNA Damage Response.

Authors:  Ana Tufegdžić Vidaković; Richard Mitter; Gavin P Kelly; Michelle Neumann; Michelle Harreman; Marta Rodríguez-Martínez; Anna Herlihy; Juston C Weems; Stefan Boeing; Vesela Encheva; Liam Gaul; Laura Milligan; David Tollervey; Ronald C Conaway; Joan W Conaway; Ambrosius P Snijders; Aengus Stewart; Jesper Q Svejstrup
Journal:  Cell       Date:  2020-03-05       Impact factor: 66.850

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  10 in total

1.  DEF1: Much more than an RNA polymerase degradation factor.

Authors:  Oluwasegun T Akinniyi; Joseph C Reese
Journal:  DNA Repair (Amst)       Date:  2021-08-05

2.  Genomic analysis of Rad26 and Rad1-Rad10 reveals differences in their dependence on Mediator and RNA polymerase II.

Authors:  Diyavarshini Gopaul; Cyril Denby Wilkes; Arach Goldar; Nathalie Giordanengo Aiach; Marie-Bénédicte Barrault; Elizaveta Novikova; Julie Soutourina
Journal:  Genome Res       Date:  2022-06-23       Impact factor: 9.438

Review 3.  Molecular basis of transcriptional pausing, stalling, and transcription-coupled repair initiation.

Authors:  Juntaek Oh; Jun Xu; Jenny Chong; Dong Wang
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-11-30       Impact factor: 4.490

Review 4.  Transcription-coupled nucleotide excision repair: New insights revealed by genomic approaches.

Authors:  Mingrui Duan; Rachel M Speer; Jenna Ulibarri; Ke Jian Liu; Peng Mao
Journal:  DNA Repair (Amst)       Date:  2021-04-20

Review 5.  Collaboration through chromatin: motors of transcription and chromatin structure.

Authors:  Nathan Gamarra; Geeta J Narlikar
Journal:  J Mol Biol       Date:  2021-02-05       Impact factor: 6.151

6.  RNA polymerase II trapped on a molecular treadmill: Structural basis of persistent transcriptional arrest by a minor groove DNA binder.

Authors:  Juntaek Oh; Tiezheng Jia; Jun Xu; Jenny Chong; Peter B Dervan; Dong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-18       Impact factor: 11.205

7.  Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier.

Authors:  Ülkü Uzun; Thomas Brown; Harry Fischl; Andrew Angel; Jane Mellor
Journal:  Cell Rep       Date:  2021-09-28       Impact factor: 9.423

8.  CSB-independent, XPC-dependent transcription-coupled repair in Drosophila.

Authors:  Nazli Deger; Xuemei Cao; Christopher P Selby; Saygin Gulec; Hiroaki Kawara; Evan B Dewey; Li Wang; Yanyan Yang; Sierra Archibald; Berkay Selcuk; Ogun Adebali; Jeff Sekelsky; Aziz Sancar; Zhenxing Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-01       Impact factor: 11.205

9.  Mechanism of Rad26-assisted rescue of stalled RNA polymerase II in transcription-coupled repair.

Authors:  Chunli Yan; Thomas Dodd; Jina Yu; Bernice Leung; Jun Xu; Juntaek Oh; Dong Wang; Ivaylo Ivanov
Journal:  Nat Commun       Date:  2021-12-01       Impact factor: 14.919

10.  Assessing the functional relevance of splice isoforms.

Authors:  Fernando Pozo; Laura Martinez-Gomez; Thomas A Walsh; José Manuel Rodriguez; Tomas Di Domenico; Federico Abascal; Jesús Vazquez; Michael L Tress
Journal:  NAR Genom Bioinform       Date:  2021-05-22
  10 in total

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