Literature DB >> 32983411

RVDB-prot, a reference viral protein database and its HMM profiles.

Thomas Bigot1, Sarah Temmam2, Philippe Pérot2, Marc Eloit2,3.   

Abstract

We present RVDB-prot, a database corresponding to the protein equivalent of the nucleic acid reference virus database RVDB. Protein databases can be helpful to perform more sensitive protein sequence comparisons. Similarly to its homologous public repository, RVDB-prot aims to provide reliable and accurately annotated unique entries, while including also an Hidden Markov Model (HMM) protein profiles database for distant protein searching. Copyright:
© 2020 Bigot T et al.

Entities:  

Keywords:  annotations; clusters; database; genomes; hmm; proteins; virus

Year:  2019        PMID： 32983411      PMCID： PMC7492780          DOI： 10.12688/f1000research.18776.2

Source DB:  PubMed          Journal:  F1000Res        ISSN： 2046-1402


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