Literature DB >> 26045439

Viral immunology. Comprehensive serological profiling of human populations using a synthetic human virome.

George J Xu1, Tomasz Kula2, Qikai Xu3, Mamie Z Li3, Suzanne D Vernon4, Thumbi Ndung'u5, Kiat Ruxrungtham6, Jorge Sanchez7, Christian Brander8, Raymond T Chung9, Kevin C O'Connor10, Bruce Walker11, H Benjamin Larman12, Stephen J Elledge13.   

Abstract

The human virome plays important roles in health and immunity. However, current methods for detecting viral infections and antiviral responses have limited throughput and coverage. Here, we present VirScan, a high-throughput method to comprehensively analyze antiviral antibodies using immunoprecipitation and massively parallel DNA sequencing of a bacteriophage library displaying proteome-wide peptides from all human viruses. We assayed over 10(8) antibody-peptide interactions in 569 humans across four continents, nearly doubling the number of previously established viral epitopes. We detected antibodies to an average of 10 viral species per person and 84 species in at least two individuals. Although rates of specific virus exposure were heterogeneous across populations, antibody responses targeted strongly conserved "public epitopes" for each virus, suggesting that they may elicit highly similar antibodies. VirScan is a powerful approach for studying interactions between the virome and the immune system.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 26045439      PMCID: PMC4844011          DOI: 10.1126/science.aaa0698

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  36 in total

1.  Human anti-JC virus serum reacts with native but not denatured JC virus major capsid protein VP1.

Authors:  M Wang; T Y Tzeng; C Y Fung; W C Ou; R T Tsai; C K Lin; G J Tsay; D Chang
Journal:  J Virol Methods       Date:  1999-03       Impact factor: 2.014

2.  Human herpesvirus-8 in Peruvian blood donors: a population with hyperendemic disease?

Authors:  Salim Mohanna; Jose-Andres Portillo; Gabriela Carriquiry; Julio Vidal; Juan Carlos Ferrufino; Juvenal Sanchez; Francisco Bravo; Eduardo Gotuzzo
Journal:  Clin Infect Dis       Date:  2007-01-11       Impact factor: 9.079

3.  Prevalence of cytomegalovirus antibody in Thai-northeastern blood donors.

Authors:  Y Urwijitaroon; S Teawpatanataworn; A Kitjareontarm
Journal:  Southeast Asian J Trop Med Public Health       Date:  1993       Impact factor: 0.267

4.  The influence of immune complex-bearing follicular dendritic cells on the IgM response, Ig class switching, and production of high affinity IgG.

Authors:  Yüksel Aydar; Selvakumar Sukumar; Andras K Szakal; John G Tew
Journal:  J Immunol       Date:  2005-05-01       Impact factor: 5.422

5.  Risk factors for human herpesvirus 8 infection among adults in the United States and evidence for sexual transmission.

Authors:  Eric A Engels; Jonnae O Atkinson; Barry I Graubard; Geraldine M McQuillan; Christine Gamache; Georgina Mbisa; Silvia Cohn; Denise Whitby; James J Goedert
Journal:  J Infect Dis       Date:  2007-06-04       Impact factor: 5.226

6.  Convergent antibody signatures in human dengue.

Authors:  Poornima Parameswaran; Yi Liu; Krishna M Roskin; Katherine K L Jackson; Vaishali P Dixit; Ji-Yeun Lee; Karen L Artiles; Simona Zompi; Maria José Vargas; Birgitte B Simen; Bozena Hanczaruk; Kim R McGowan; Muhammad A Tariq; Nader Pourmand; Daphne Koller; Angel Balmaseda; Scott D Boyd; Eva Harris; Andrew Z Fire
Journal:  Cell Host Microbe       Date:  2013-06-12       Impact factor: 21.023

7.  Protein interaction discovery using parallel analysis of translated ORFs (PLATO).

Authors:  Jian Zhu; H Benjamin Larman; Geng Gao; Romel Somwar; Zijuan Zhang; Uri Laserson; Alberto Ciccia; Natalya Pavlova; George Church; Wei Zhang; Santosh Kesari; Stephen J Elledge
Journal:  Nat Biotechnol       Date:  2013-03-17       Impact factor: 54.908

Review 8.  Emerging view of the human virome.

Authors:  Kristine M Wylie; George M Weinstock; Gregory A Storch
Journal:  Transl Res       Date:  2012-04-24       Impact factor: 7.012

Review 9.  The human virome: new tools and concepts.

Authors:  Marc Lecuit; Marc Eloit
Journal:  Trends Microbiol       Date:  2013-07-30       Impact factor: 17.079

10.  The immune epitope database 2.0.

Authors:  Randi Vita; Laura Zarebski; Jason A Greenbaum; Hussein Emami; Ilka Hoof; Nima Salimi; Rohini Damle; Alessandro Sette; Bjoern Peters
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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  155 in total

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Authors:  Leonard J Kish; Eric J Topol
Journal:  Nat Biotechnol       Date:  2015-09       Impact factor: 54.908

2.  Immunology: Chronic effects of acute infections.

Authors:  Nicola Harris
Journal:  Nature       Date:  2015-10-22       Impact factor: 49.962

3.  Genome watch: The chronicles of virus-host affairs.

Authors:  Pinky Langat; Velislava Petrova
Journal:  Nat Rev Microbiol       Date:  2015-07-13       Impact factor: 60.633

4.  [Stress and optimal ageing].

Authors:  Manfred Gogol
Journal:  Z Gerontol Geriatr       Date:  2015-07-25       Impact factor: 1.281

Review 5.  Aortitis - An Interdisciplinary Challenge.

Authors:  Tetyana Shchetynska-Marinova; Klaus Amendt; Maliha Sadick; Michael Keese; Martin Sigl
Journal:  In Vivo       Date:  2021 Jan-Feb       Impact factor: 2.155

Review 6.  Reducing Uncertainty for Acute Febrile Illness in Resource-Limited Settings: The Current Diagnostic Landscape.

Authors:  Matthew L Robinson; Yukari C Manabe
Journal:  Am J Trop Med Hyg       Date:  2017-06       Impact factor: 2.345

Review 7.  Principles of Broad and Potent Antiviral Human Antibodies: Insights for Vaccine Design.

Authors:  James E Crowe
Journal:  Cell Host Microbe       Date:  2017-08-09       Impact factor: 21.023

8.  Kidney disease in the setting of HIV infection: conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference.

Authors:  Charles R Swanepoel; Mohamed G Atta; Vivette D D'Agati; Michelle M Estrella; Agnes B Fogo; Saraladevi Naicker; Frank A Post; Nicola Wearne; Cheryl A Winkler; Michael Cheung; David C Wheeler; Wolfgang C Winkelmayer; Christina M Wyatt
Journal:  Kidney Int       Date:  2018-02-03       Impact factor: 10.612

9.  A novel synthetic peptide microarray assay detects Chlamydia species-specific antibodies in animal and human sera.

Authors:  Konrad Sachse; Kh Shamsur Rahman; Christiane Schnee; Elke Müller; Madlen Peisker; Thomas Schumacher; Evelyn Schubert; Anke Ruettger; Bernhard Kaltenboeck; Ralf Ehricht
Journal:  Sci Rep       Date:  2018-03-16       Impact factor: 4.379

Review 10.  Residual inflammation and viral reservoirs: alliance against an HIV cure.

Authors:  Marta Massanella; Rémi Fromentin; Nicolas Chomont
Journal:  Curr Opin HIV AIDS       Date:  2016-03       Impact factor: 4.283

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