Literature DB >> 32660862

Report of the second international conference on next generation sequencing for adventitious virus detection in biologics for humans and animals.

Arifa S Khan1, Johannes Blümel2, Dieter Deforce3, Marion F Gruber4, Carmen Jungbäck5, Ivana Knezevic6, Laurent Mallet7, David Mackay8, Jelle Matthijnssens9, Maureen O'Leary10, Sebastiaan Theuns3, Joseph Victoria11, Pieter Neels5.   

Abstract

The IABS-EU, in association with PROVAXS and Ghent University, hosted the "2nd Conference on Next Generation Sequencing (NGS) for Adventitious Virus Detection in Human and Veterinary Biologics" held on November 13th and 14th 2019, in Ghent, Belgium. The meeting brought together international experts from regulatory agencies, the biotherapeutics and biologics industries, contract research organizations, and academia, with the goal to develop a scientific consensus on the readiness of NGS for detecting adventitious viruses, and on the use of this technology to supplement or replace/substitute the currently used assays. Participants discussed the progress on the standardization and validation of the technical and bioinformatics steps in NGS for characterization and safety evaluation of biologics, including human and animal vaccines. It was concluded that NGS can be used for the detection of a broad range of viruses, including novel viruses, and therefore can complement, supplement or even replace some of the conventional adventitious virus detection assays. Furthermore, the development of reference viral standards, complete and correctly annotated viral databases, and protocols for the validation and follow-up investigations of NGS signals is necessary to enable broader use of NGS. An international collaborative effort, involving regulatory authorities, industry, academia, and other stakeholders is ongoing toward this goal. Published by Elsevier Ltd.

Entities:  

Keywords:  Adventitious viruses; Bioinformatics; Biologicals; Biotherapeutics; High-throughput sequencing; In vitro assays; In vivo assays; Massively parallel sequencing; Next-generation sequencing; Vaccines; Virus detection

Mesh:

Substances:

Year:  2020        PMID: 32660862      PMCID: PMC7351673          DOI: 10.1016/j.biologicals.2020.06.002

Source DB:  PubMed          Journal:  Biologicals        ISSN: 1045-1056            Impact factor:   1.856


  26 in total

1.  Systematic evaluation of in vitro and in vivo adventitious virus assays for the detection of viral contamination of cell banks and biological products.

Authors:  James Gombold; Stephen Karakasidis; Paula Niksa; John Podczasy; Kitti Neumann; James Richardson; Nandini Sane; Renita Johnson-Leva; Valerie Randolph; Jerald Sadoff; Phillip Minor; Alexander Schmidt; Paul Duncan; Rebecca L Sheets
Journal:  Vaccine       Date:  2014-03-25       Impact factor: 3.641

2.  Report of the 2019 NIST-FDA workshop on standards for next generation sequencing detection of viral adventitious agents in biologics and biomanufacturing.

Authors:  Megan H Cleveland; Bharathi Anekella; Michael Brewer; Pei-Ju Chin; Heather Couch; Eric Delwart; Jim Huggett; Scott Jackson; Javier Martin; Serge Monpoeho; Tom Morrison; Siemon H S Ng; David Ussery; Arifa S Khan
Journal:  Biologicals       Date:  2020-02-22       Impact factor: 1.856

3.  Cataloguing the taxonomic origins of sequences from a heterogeneous sample using phylogenomics: applications in adventitious agent detection.

Authors:  Robert L Charlebois; Siemon H S Ng; Lucy Gisonni-Lex; Laurent Mallet
Journal:  PDA J Pharm Sci Technol       Date:  2014 Nov-Dec

4.  A Multicenter Study To Evaluate the Performance of High-Throughput Sequencing for Virus Detection.

Authors:  Arifa S Khan; Siemon H S Ng; Olivier Vandeputte; Aisha Aljanahi; Avisek Deyati; Jean-Pol Cassart; Robert L Charlebois; Lanyn P Taliaferro
Journal:  mSphere       Date:  2017-09-13       Impact factor: 4.389

5.  A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection.

Authors:  Norman Goodacre; Aisha Aljanahi; Subhiksha Nandakumar; Mike Mikailov; Arifa S Khan
Journal:  mSphere       Date:  2018-03-14       Impact factor: 4.389

6.  Nanopore sequencing as a revolutionary diagnostic tool for porcine viral enteric disease complexes identifies porcine kobuvirus as an important enteric virus.

Authors:  Sebastiaan Theuns; Bert Vanmechelen; Quinten Bernaert; Ward Deboutte; Marilou Vandenhole; Leen Beller; Jelle Matthijnssens; Piet Maes; Hans J Nauwynck
Journal:  Sci Rep       Date:  2018-06-29       Impact factor: 4.379

7.  Kraken: ultrafast metagenomic sequence classification using exact alignments.

Authors:  Derrick E Wood; Steven L Salzberg
Journal:  Genome Biol       Date:  2014-03-03       Impact factor: 13.583

8.  Evaluation of the broad-range PCR-electrospray ionization mass spectrometry (PCR/ESI-MS) system and virus microarrays for virus detection.

Authors:  Lanyn P Taliaferro; Teresa A Galvin; Hailun Ma; Syed Shaheduzzaman; Dhanya K Williams; Dustin R Glasner; Arifa S Khan
Journal:  Viruses       Date:  2014-04-25       Impact factor: 5.048

9.  Development of a candidate reference material for adventitious virus detection in vaccine and biologicals manufacturing by deep sequencing.

Authors:  Edward T Mee; Mark D Preston; Philip D Minor; Silke Schepelmann
Journal:  Vaccine       Date:  2015-12-19       Impact factor: 3.641

10.  Current Perspectives on High-Throughput Sequencing (HTS) for Adventitious Virus Detection: Upstream Sample Processing and Library Preparation.

Authors:  Siemon H Ng; Cassandra Braxton; Marc Eloit; Szi Fei Feng; Romain Fragnoud; Laurent Mallet; Edward T Mee; Sarmitha Sathiamoorthy; Olivier Vandeputte; Arifa S Khan
Journal:  Viruses       Date:  2018-10-16       Impact factor: 5.048

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  3 in total

1.  LABRADOR-A Computational Workflow for Virus Detection in High-Throughput Sequencing Data.

Authors:  Izabela Fabiańska; Stefan Borutzki; Benjamin Richter; Hon Q Tran; Andreas Neubert; Dietmar Mayer
Journal:  Viruses       Date:  2021-12-18       Impact factor: 5.048

2.  Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery.

Authors:  Philippe Pérot; Thomas Bigot; Sarah Temmam; Béatrice Regnault; Marc Eloit
Journal:  Viruses       Date:  2022-09-08       Impact factor: 5.818

3.  Evaluation and validation of next-generation sequencing to support lot release for a novel type 2 oral poliovirus vaccine.

Authors:  John O Konz; Tim Schofield; Sarah Carlyle; Rahnuma Wahid; Azeem Ansari; Jeroen R P M Strating; Ming Te Yeh; Hasmik Manukyan; Saskia L Smits; Erman Tritama; Latri Rahmah; Dori Ugiyadi; Raul Andino; Majid Laassri; Konstantin Chumakov; Andrew Macadam
Journal:  Vaccine X       Date:  2021-06-11
  3 in total

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