| Literature DB >> 32976686 |
Yuntao Song1, Guohui Xu1, Tonghui Ma2, Yanli Zhu3, Hao Yu1, Wenbin Yu1, Wei Wei1, Tianxiao Wang1, Bin Zhang1.
Abstract
BACKGROUND: Thyroid nodules are highly prevalent, with fine-needle aspiration (FNA) commonly used as the standard preoperative tool for their diagnosis. However, the method classifies some of the samples as indeterminate, leading to unnecessary surgery. In this study, we evaluated the value of next-generation sequencing (NGS) for cancer diagnosis in indeterminate thyroid nodules.Entities:
Keywords: indeterminate cytology; molecular diagnosis; next-generation sequencing; thyroid cancer; thyroid nodules
Year: 2020 PMID: 32976686 PMCID: PMC7666727 DOI: 10.1002/cam4.3450
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
Molecular alterations and risk of malignancy
| Risk categories,% | Molecular alterations | Frequency | Malignancy rate, % | Histological diagnosis |
|---|---|---|---|---|
|
High‐Risk N = 28 100 (20/20) | BRAF V600E | 15 | 100 (12/12) | 12 cPTC |
| PIK3CA | 1 | – (0/0) | NA | |
| RET fusion | 3 | 100 (2/2) | 2cPTC | |
| NTRK1 fusion | 1 | 100 (1/1) | 1fvPTC | |
| NTRK3 fusion | 2 | 100(2/2) | 1cPTC, 1fvPTC | |
| ALK fusion | 1 | 100 (1/1) | 1fvPTC | |
| KRAS (VAF ≥ 30%) | 2 | 100 (2/2) | 1cPTC, 1fvPTC | |
| HRAS (VAF ≥ 30%) | 2 | – (0/0) | NA | |
| NRAS (VAF ≥ 30%) | 1 | – (0/0) | NA | |
|
Low‐Risk N = 24 28.6 (4/14) | EIF1AX | 4 | 0 (0/2) | 2H/AN |
| TSHR | 2 | 0 (0/2) | 1H/AN, 1HT | |
| KRAS (VAF < 30%) | 4 | 100 (2/2) | 1FTC, 1fvPTC | |
| HRAS (VAF < 30%) | 5 | 0 (0/2) | 2H/AN | |
| NRAS (VAF < 30%) | 6 | 50% (2/4) | 1cPTC, 1fvPTC, 2H/AN | |
| PPARG fusion | 1 | 0 (0/1) | 1H/AN | |
| NRAS (VAF < 30%) & EIF1AX | 1 | 0 (0/1) | 1FA | |
| HRAS(VAF < 30%) & EIF1AX | 1 | – (0/0) | NA | |
|
Benign‐like N = 136 18.0 (9/50) | EZH1 | 3 | 0 (0/1) | 1 H/AN |
| SPOP | 8 | 0 (0/2) | 2H/AN | |
| SPOP & BRAF L597Q | 1 | 0 (0/1) | 1H/AN | |
| ZNF148 & TERT | 1 | 0 (0/1) | 1H/AN | |
| No mutation | 123 | 20 (9/45) | 3 FTC, 5cPTC, 1 fvPTC, 2 NIFTP, 2 FT‐UMP, 9 FA, 16 H/AN, 3HT, 4 HCA |
cPTC, conventional variant of papillary thyroid carcinoma; FA, follicular adenoma; FTC, follicular thyroid carcinoma; FT‐UMP, follicular tumors of uncertain malignant potential; fvPTC, follicular variant of papillary thyroid carcinoma; H/AN, hyperplastic/adenomatous nodule; HCA, Hürthle cell adenomas; HT, Hashimoto thyroiditis; NA, not applicable; VAF: variant allele frequency.
One patient with squamous metaplasia.
If intermediate nodules as benign, the risk of malignancy is 20% (9/45), if intermediate nodules as malignant, the risk is 29% (13/45).
FIGURE 1Management of indeterminate thyroid nodules. cPTC, conventional variant of papillary thyroid carcinoma; FTC, follicular thyroid carcinoma; FT‐UMP, follicular tumors of uncertain malignant potential; fvPTC, follicular variant of papillary thyroid carcinoma; NIFTP, noninvasive follicular thyroid neoplasms with papillary‐like nuclear features
The performance of multigene testing
| 1. All ITN (Bethesda Ⅲ+Ⅳ, n = 84) | ||||||
| A. Intermediate nodules as benign | ||||||
| Histological diagnosis |
Sensitivity: 73% (54‐86) Specificity: 80% (66‐90) PPV: 71% (52‐84) NPV: 82% (68‐91) | |||||
| Malignant | Benign | |||||
| Molecular test | Positive | 24 | 10 | |||
| Negative | 9 | 41 | ||||
| Prevalence of malignancy: 39% | ||||||
| B. Intermediate nodules as malignant | ||||||
| Histological diagnosis |
Sensitivity: 65% (47‐79) Specificity: 79% (64‐89) PPV: 71% (52‐84) NPV: 74% (59‐85) | |||||
| Malignant | Benign | |||||
| Molecular test | Positive | 24 | 10 | |||
| Negative | 13 | 37 | ||||
| Prevalence of malignancy: 44% | ||||||
Abbreviations: NPV, negative predictive value; PPV, positive predictive value.
Clinicopathologic characteristics of the nine test‐negative malignant nodules
| Patient | Sex | Age | TBSRTC | Ultrasound characteristics | Size | Histology | ETE | LNM |
|---|---|---|---|---|---|---|---|---|
| 1 | F | 42 | III | Hypoechoic, taller than wide, irregular margins | 0.8 | fvPTC | No | No |
| 2 | F | 60 | III | Hypoechoic, irregular margins, microcalcifications | 0.5 | fvPTC | No | No |
| 3 | M | 25 | III | Hypoechoic, irregular margins, microcalcifications | 0.6 | cPTC | No | No |
| 4 | F | 42 | III | Hypoechoic, taller than wide, irregular margins, microcalcifications | 0.7 | cPTC | No | No |
| 5 | F | 56 | III | Hypoechoic, microcalcifications, lymphadenopathy | 0.6 | cPTC | No | Yes |
| 6 | F | 30 | IV | Hypoechoic, irregular margins, microcalcifications | 0.8 | cPTC | No | No |
| 7 | F | 37 | IV | Hypoechoic, irregular margins, microcalcifications, intranodular vascularity | 1.7 | FTC | No | No |
| 8 | M | 36 | IV | Hypoechoic, irregular margins, intranodular vascularity | 2.8 | FTC | No | No |
| 9 | F | 49 | IV | Hypoechoic, irregular margins, eggshell calcification, intranodular vascularity | 3.2 | FTC | No | No |
Abbreviations: ETE, extrathyroidal extension; LNM: lymph node metastesis; TBSRTC, The Bethesda system for reporting thyroid cytopatjology.
Measured in pathological specimen.