| Literature DB >> 32917832 |
John Londono1,2, Ana M Santos3, Juan C Rueda3, Enrique Calvo-Paramo4, Ruben Burgos-Vargas5, Gilberto Vargas-Alarcon6, Nancy Martinez-Rodriguez7, Sofia Arias-Correal3, Guisselle-Nathalia Muñoz3, Diana Padilla3, Francy Cuervo3, Viviana Reyes-Martinez3, Santiago Bernal-Macías3, Catalina Villota-Eraso3, Luz M Avila-Portillo3,2, Consuelo Romero2, Juan F Medina8.
Abstract
OBJECTIVE: To determine the association between endoplasmic reticulum aminopeptidase (ERAP)1 and ERAP2 single-nucleotide polymorphisms (SNPs) and human leukocyte antigens (HLA)-B27+ or HLA-B15+ patients with spondyloarthritis (SpA).Entities:
Keywords: Ankylosing Spondylitis; Autoimmune Diseases; Gene Polymorphism; Spondyloarthritis
Mesh:
Substances:
Year: 2020 PMID: 32917832 PMCID: PMC7525252 DOI: 10.1136/rmdopen-2020-001250
Source DB: PubMed Journal: RMD Open ISSN: 2056-5933
Polymorphisms of ERAP1 and ERAP2 genes in HLA-B27+ and HLA-B15+ patients with SpA
| Gene | dbSNP* | Chromosome allele position | Amino acid change(nucleotide variants)† | Location | Function |
|---|---|---|---|---|---|
|
| rs27044 | chr5:96783148 | Q (CAA)/E (GAA) | Exon | Missense |
| rs17482078 | chr5:96783162 | R (CGA)/P (CCA) | Exon | Missense | |
| rs10050860 | chr5:96786506 | D (GAC)/N (AAC) | Exon | Missense | |
| rs30187 | chr5:96788627 | K (AAG/R (AGG) | Exon | Missense | |
|
| rs2549782 | ch5:96895296 | K (AAG)/N (AAT) | Exon | Missense |
| rs2248374 | chr5:96900192 | (G)/(A) | Intron | G allele: mRNA decay | |
| rs2910686 | chr5:96916885 | (C)/(T) | Intron | – |
*Links to the online information on each SNP in the dbSNP—the Reference SNP (rs) Report web pages—are within parenthesis as follows: rs27044 (https://www.ncbi.nlm.nih.gov/snp/rs27044), rs17482078(https://www.ncbi.nlm.nih.gov/snp/rs17482078), rs10050860 (https://www.ncbi.nlm.nih.gov/snp/rs10050860), rs30187 (https://www.ncbi.nlm.nih.gov/snp/rs30187), rs2549782 (https://www.ncbi.nlm.nih.gov/snp/rs2549782), rs2248374 (https://www.ncbi.nlm.nih.gov/snp/rs2248374), rs2910686 (https://www.ncbi.nlm.nih.gov/snp/rs2910686).
†Nucleotide variants coloured in red.
dbSNP, Single Nucleotide Polymorphism Database; ERAP, endoplasmic reticulum aminopeptidase; HLA, human leukocyte antigen; SpA, spondyloarthritis.
Characterisation of demographic and clinical variables in patients with SpA with HLA-B27 and HLA-B15
| Variable | HLA-B15 (n=34) | HLA-B27 (n=70) | P value |
|---|---|---|---|
| Age (years) median±SD | 35.7±10.0 | 35.8±13.6 | 0.97 |
| Age of onset (years) median±SD | 28.2±9.4 | 27.7±10.5 | 0.81 |
| Duration disease (years) median (IQR) | 3.4 (2–12) | 3.6 (1–12) | 0.86 |
| Gender—M/F (%) | 15/19 (44/56) | 55/15 (79/21) |
|
| Ratio—M:F | 0.8:1 | 3.7:1 | |
| ESSG criteria | |||
| AS (n=54) | 13 | 41 | 0.08 |
| uSpA (n=32) | 17 | 15 |
|
| ReA (n=18) | 4 | 14 | 0.44 |
| ASAS criteria | |||
| axSpA | |||
| Patients with axSpA (n=97) | 27 | 70 |
|
| Patients with pure axSpA (n=10) | 0 | 10 |
|
| Patients with mixed ax/pSpA (n=87) | 27 | 60 | 0.6 |
| pSpA | |||
| Patients with pSpA (n=94) | 34 | 60 | |
| Patients with pure pSpA (n=4) | 4 | 0 |
|
| Patients with mixed ax/pSpA (n=90) | 30 | 60 |
AS, ankylosing spondylitis; ASAS, Assessment of Spondyloarthritis International Society; axSpA, axial SpA; ESSG, European Spondyloarthropathy Study Group; HLA, human leukocyte antigen; pSpA, peripheral SpA; ReA, reactive spondyloarthritis; SpA, spondyloarthritis; uSpA, undifferentiated spondyloarthritis.
Levels of inflammatory serological biomarkers in patients with SpA according to the presence of HLA-B27 or HLA-B15
| Biomarkers | HLA-B27 | HLA-B15 | P value |
|---|---|---|---|
| CRP (mg/dL) | 16.9±22.1 | 11.1±15.3 | |
| IL-1α (pg/mL) | 52.9±34.8 | 39.8±2.4 | |
| IL-6 (pg/mL) | 53.0±47.5* | 42.5±39.2 | |
| IL-17 (pg/mL) | 57.1±66.0 | 28.4±14.3 | <0.05 |
| IL-23 (pg/mL) | 5.7±4.2 | 3.7±0.9 | <0.05 |
| LBP (µ/mL) | 8.6±4.1 | 9.1±5.5 | |
| MMP-3 (ng/mL) | 28.5±29.3 | 16.5±16.8 | |
| SSA (pg/mL) | 1185±1034.6 | 1339.4±1107.2 | |
| TNF-α (pg/mL) | 23.0±15.3 | 17.3±3.3† | |
| ESR (mm/hour) | 21.4±16.3 | 19.8±13.4 |
*Two extreme outliers were excluded.
†One extreme outlier value (293 pg/mL) was excluded.
Results are expressed as mean±SD.
CRP, C reactive protein; ESR, erythrocyte sedimentation rate; IL, interleukin; LBP, lipopolysaccharide-binding protein; M-CSF, macrophage colony-stimulating factor; MMP-3, metalloproteinase-3; SAA, serum amyloid A; SpA, spondyloarthritis; TNF-α, tumour necrosis factor α.
Figure 1Levels of serum cytokines in patients with SpA positive for HLA-B27 (n=25) or HLA-B15 (n=12). Results are expressed as mean±SD. HLA, human leukocyte antigen; IL, interleukin; SpA, spondyloarthritis; TNF-α, tumour necrosis factor α.
Frequency of ERAP SNP haplotypes in patients with SpA with HLA-B27 and HLA-B15
| Haplotypes | Frequencies | OR | (95% CI) | P value | |
|---|---|---|---|---|---|
| HLA-B15 | HLA-B27+ | ||||
| Haplotypes formed by ERAP2 SNPs rs2549782, rs2248374 and rs2910686 | |||||
| TGT | 0.201 | 0.078 |
| (1.264 to 6.585) |
|
| TGC | 0.055 | 0.227 |
| (1.524 to 13.187) |
|
| CAT | 0.020 | 0.119 |
| (1.181 to 68.807) |
|
| CAC | 0.643 | 0.499 | 1.750 | (0.968 to 3.162) | 0.077 |
| CGC | 0.016 | 0.035 | 0.465 | (0.053 to 4.056) | 0.672 |
| CGT | 0.031 | 0.013 | 2.406 | (0.332 to 17.45) | 0.584 |
| TAT | 0.019 | 0.013 | 1.185 | (0.106 to 13.29) | 1.00 |
| TAC | 0.013 | 0.015 | 1.185 | (0.106 to 13.29) | 1.00 |
| Haplotypes formed by ERAP1 SNPs rs27044, rs17482078, rs10050860 and rs30187 | |||||
|
| 0.464 | 0.442 | 1.117 | (0.627 to 1.990) | 0.708 |
|
| 0.301 | 0.330 | 0.895 | (0.480 to 1.668) | 0.729 |
|
| 0.164 | 0.114 | 1.533 | (0.680 to 3.456) | 0.301 |
|
| 0.067 | 0.077 | 0.774 | (0.240 to 2.495) | 0.783 |
|
| 0.001 | 0.016 | 0.785 | (0.080 to 7.684) | 1.00 |
ERAP, endoplasmic reticulum aminopeptidase; HLA, human leukocyte antigen; IL, interleukin; SpA, spondyloarthritis; SNP, single nucleotide polymorphism.