| Literature DB >> 32901136 |
Nuwan Dharmawardana1,2, Thomas Goddard3, Charmaine Woods4,5, David I Watson5, Eng H Ooi4,5, Roger Yazbeck5.
Abstract
BACKGROUND: Improving the ability to identify early-stage head and neck squamous cell carcinoma (HNSCC) can improve treatment outcomes and patient morbidity. We sought to determine the diagnostic accuracy of breath analysis as a non-invasive test for detecting HNSCC.Entities:
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Year: 2020 PMID: 32901136 PMCID: PMC7722848 DOI: 10.1038/s41416-020-01051-9
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Comparison of demographics, comorbidities and medications between cancer and control patient groups.
| Variable | Control group No. (%) | Cancer group No. (%) | |
|---|---|---|---|
| Count | 50 (50) | 50 (50) | |
| Age—Years, median (Range) | 56 (31–86) | 58 (33–88) | 0.104b |
| Sex | <0.001a* | ||
| Female | 25 (50) | 7 (14) | |
| Male | 25 (50) | 43 (86) | |
| Smoking | 0.311a | ||
| Never smoked | 19 (38) | 11 (22) | |
| Ex-smoker | 15 (30) | 22 (44) | |
| Current smoker | 16 (32) | 17 (34) | |
| Smoking Pack Years (Range) | 23.6 (0–104) | 24.0 (0–198) | |
| Alcohol | 0.264a | ||
| No alcohol intake | 18 (36) | 11 (22) | |
| Intake ≤2 days per week | 19 (38) | 17 (34) | |
| Intake ≥3 days per week | 13 (26) | 22 (44) | |
| BMI | 28.5 (17.9–45.4) | 25.6 (17.3–38.2) | 0.002b* |
| BMI Classd | 0.118a | ||
| Under Weight | 1 (2) | 3 (6) | |
| Normal Weight | 11 (22) | 20 (40) | |
| Pre-Obesity | 18 (36) | 17 (34) | |
| Obesity: Class I | 14 (28) | 8 (16) | |
| Class II | 2 (4) | 2 (4) | |
| Class III | 4 (8) | 0 | |
| ASA grade | 0.328a | ||
| 1 | 34 (68) | 33 (66) | |
| 2 | 12 (24) | 17 (34) | |
| 3 | 4 (8) | 0 | |
| Comorbidities | 0.623a | ||
| Ischaemic heart disease | 3 (6) | 5 (1) | |
| Chronic respiratory disease | 7 (14) | 8 (16) | |
| Chronic renal disease | 0 | 0 | |
| Chronic liver disease | 1 (2) | 1 (2) | |
| Diabetes | 6 (12) | 6 (12) | |
| Medicationsc | 0.126a | ||
| Anti-reflux | 20 (40) | 9 (18) | |
| Anti-hypertensives | 12 (24) | 18 (36) | |
| Antibiotics | 0 | 0 | |
| Anti-platelet/coagulant | 2 (4) | 5 (1) | |
| Tooth Brushinge | 0.015a* | ||
| Yes | 41 (84) | 31 (62) | |
| No | 8 (16) | 19 (38) |
*Statistical significance (p < 0.05).
aChi-square test.
bMann-Whitney-U test.
cMedications taken in the last seven days are reported.
dBody mass index (BMI) class reported as per World Health Organization classification.
eTooth brushing in the morning of breath sample collection.
Fig. 1Data analysis pipeline for case selection, data optimisation, training/testing data split, dimension reduction, model building and model testing.
Description of cancer specific factors.
| Cancer related factor | Patients, No. (%) |
|---|---|
| Head and neck subsite | |
| Oral Cavity | 16 (32) |
| Oropharynx | 23 (46) |
| p16 positive | 19 |
| p16 negative | 4 |
| Larynx | 15 (30) |
| Clinical T stage | |
| 1 | 16 (32) |
| 2 | 17 (34) |
| 3 | 7 (14) |
| 4 | 10 (20) |
| Neck node status | |
| Negative | 21 (42) |
| Positive | 29 (58) |
| Overall prognostic stage | |
| I | 18 (36) |
| II | 11 (22) |
| III | 9 (18) |
| IV | 12 (24) |
Fig. 2Model 1—Receiver operating curve of the testing cohort based on logistic regression model using the two variables from distinct reagent ions.
Fig. 3Model 2—Receiver operating curve of the testing cohort based on logistic regression model with one variable from each reagent ion (three variables in total).
Volatiles organic compounds corresponding to product mass ions of interest.
| Variable | VOCs | Product Formulae | Chemistry | Carcinogenicity/toxicity |
|---|---|---|---|---|
| R19P49 | ||||
| Reagent ion H3O+ | Formaldehyde*[ | H2CO.H+.H2O | Secondary | Known carcinogen |
| Product m/z 49 | Methyl mercaptan*[ | CH4S.H+ | Primary | Acute toxicity |
| Sevoflurane | CH2FO+ | Primary | Irritant | |
| R30P147 | ||||
| Reagent ion NO+ | Benzyl cyanide | C8H7N.NO+ | Primary | Acute toxicity |
| Product m/z 147 | Coumarin | C9H6O2+.H+ | Secondary | Suspected carcinogen |
| Cuminal | C10H11O+ | Primary | Irritant | |
| R32P135 | ||||
| Reagent ion O2+ | 2-aminoacetophenone | C8H9NO+ | Primary | Non-toxic |
| Product m/z 135 | Amphetamine | C9H13N+ | Primary | Acute toxicity |
| Benzothiazole | C7H5NS+ | Primary | Acute toxicity | |
| Carvacrol | C9H11O+ | Primary | Irritant | |
Indicated carcinogenicity and toxicity is based on details from pubchem.ncbi.nlm.nih.gov. Previously reported predictive nature of cancer was indicated with * and relevant citation.