Literature DB >> 32896283

Focused rational iterative site-specific mutagenesis (FRISM).

Danyang Li1, Qi Wu2, Manfred T Reetz3.   

Abstract

Directed evolution has emerged as the most productive enzyme engineering method, with stereoselectivity playing a crucial role when evolving mutants for application in synthetic organic chemistry and biotechnology. In order to reduce the screening effort (bottleneck of directed evolution), improved methods for the creation of small and smart mutant libraries have been developed, including the combinatorial active-site saturation test (CAST) which involves saturation mutagenesis at appropriate residues surrounding the binding pocket, and iterative saturation mutagenesis (ISM). Nevertheless, even CAST/ISM mutant libraries require a formidable screening effort. Thus far, rational design as the alternative protein engineering technique has had only limited success when aiming for stereoselectivity. Here, we highlight a recent methodology dubbed focused rational iterative site-specific mutagenesis (FRISM), in which mutant libraries are not involved. It makes use of the tools that were previously employed in traditional rational enzyme design, but, inspired by CAST/ISM, the process is performed in an iterative manner. Only a few predicted mutants need to be screened, a fast process which leads to the identification of highly enantioselective and sufficiently active mutants.
© 2020 Elsevier Inc. All rights reserved.

Keywords:  Directed enzyme evolution; Focused rational iterative site-specific mutagenesis; Kinetic resolution; Lipases; Stereoselectivity

Mesh:

Year:  2020        PMID: 32896283     DOI: 10.1016/bs.mie.2020.04.055

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  6 in total

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Journal:  Nat Commun       Date:  2022-06-23       Impact factor: 17.694

3.  The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins.

Authors:  Katrin Röllen; Joachim Granzin; Alina Remeeva; Mehdi D Davari; Thomas Gensch; Vera V Nazarenko; Kirill Kovalev; Andrey Bogorodskiy; Valentin Borshchevskiy; Stefanie Hemmer; Ulrich Schwaneberg; Valentin Gordeliy; Karl-Erich Jaeger; Renu Batra-Safferling; Ivan Gushchin; Ulrich Krauss
Journal:  J Biol Chem       Date:  2021-04-13       Impact factor: 5.157

4.  Enhancement of protein thermostability by three consecutive mutations using loop-walking method and machine learning.

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Journal:  Sci Rep       Date:  2021-06-04       Impact factor: 4.379

5.  Light-driven decarboxylative deuteration enabled by a divergently engineered photodecarboxylase.

Authors:  Jian Xu; Jiajie Fan; Yujiao Lou; Weihua Xu; Zhiguo Wang; Danyang Li; Haonan Zhou; Xianfu Lin; Qi Wu
Journal:  Nat Commun       Date:  2021-06-25       Impact factor: 14.919

Review 6.  A Unique P450 Peroxygenase System Facilitated by a Dual-Functional Small Molecule: Concept, Application, and Perspective.

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  6 in total

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