| Literature DB >> 20170501 |
Feng Lin1, Kumar Muthuraman, Mark Lawley.
Abstract
BACKGROUND: Non-pharmaceutical interventions (NPI) are the first line of defense against pandemic influenza. These interventions dampen virus spread by reducing contact between infected and susceptible persons. Because they curtail essential societal activities, they must be applied judiciously. Optimal control theory is an approach for modeling and balancing competing objectives such as epidemic spread and NPI cost.Entities:
Mesh:
Year: 2010 PMID: 20170501 PMCID: PMC2850906 DOI: 10.1186/1471-2334-10-32
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Figure 1Scheme of Susceptible-Infectious-Recovered/Death (SIRD) Model. Boxes represent compartments and arcs represent flux between compartments. Figure 1 expands the classic Susceptible-Infectious-Recovered (SIR) model to capture the mortality.
Model notation. provides a summary of notation.
| List of notation | |
|---|---|
| proportion of population that is susceptible in the community at time | |
| proportion of population that is infectious in the community at time | |
| proportion of population that has recovered in the community at time | |
| v of population that has died in the community at time | |
| state that describes the disease status of a community | |
| initial disease state of a community | |
| decision variable to model NPI implementation, | |
| maximum reduction in infection rate | |
| time when vaccine becomes available, assumed to be exponential with mean Φ | |
| infection rate | |
| recovery rate | |
| death rate | |
| relative cost of NPI compared to a single death, | |
| basic reproductive number, the average number of secondary cases an infectious individual case will cause | |
| value function defined as expected person-days lost | |
| control that minimizes the value function | |
| switching curve | |
| Ω ={( | state space |
| Ω1 = {( | state space where |
| Ω2 = {( | state space where |
| proportion of the control space | |
| Hamilton-Jacobi-Bellman equation |
Figure 2Optimal NPI policy and optimal isolation policy derived in [37](. Figure 2 shows the optimal control policies for two infection rates, 0.4 and 0.6, given a recovery rate γ = 0.25 and a death rate τ = 0.05. 2(a) presents the optimal NPI control for β = 0.4 and R0 = 1.33. 2(b) presents the optimal NPI control for β = 0.6 and R0 = 2.00. 2(c) presents the optimal isolation policy derived in [37] for β = 0.4 and R0 = 1.33. (d) presents the optimal isolation policy derived in [37] for β = 0.6 and R0 = 2.00.
Figure 3Epidemic curves of infectious and dead population with and without NPI implementation. Figure 3 shows the impact of optimal control on pandemic severity, peak, and total deaths, when NPIs are triggered at different initial states. (a) compares the epidemic curves with and without NPIs, starting from a state 99% susceptible and 1% infected when β = 0.4. (b) compares the epidemic curves with and without NPIs, starting from a state 99% susceptible and 1% infected when β = 0.6. (c) compares the epidemic curves with and without NPIs, starting from a state 67% susceptible and 33% infected when β = 0.4. (d) compares the epidemic curves with and without NPIs, starting from a state 50% susceptible and 50% infected when β = 0.6.
Figure 4Optimal NPI policy obtained under quadratic control cost. Figure 4 presents the optimal NPI policy obtained under quadratic control cost. (a) presents the optimal NPI policy assuming quadratic control cost for an influenza pandemic characterized as β = 0.4, γ = 0.25, τ = 0.05, c = 0.05, and b = 0.2β. (b) presents the optimal NPI policy assuming quadratic control cost for an influenza pandemic characterized as β = 0.6, τ = 0.25, γ = 0.05, c = 0.05, and b = 0.2β.
Comparison of the means of the expected person-days lost per person due to death and control intensity between the linear and quadratic models
| Linear | Quadratic | Linear | Quadratic | |
|---|---|---|---|---|
| 0.4 | 3.676 | 5.447 | 38.9 | 36.7 |
| 0.6 | 4.210 | 5.448 | 37.2 | 33.9 |
Parameter ranges. summarizes the estimated probability distribution functions (PDFs) of five input parameters, R0, 1/γ, 1/τ, c and b.
| Parameter | Unit | Parameter Distribution |
|---|---|---|
| cases per infectious individual | Gamma(4.56,0.31) [ | |
| 1/ | days | Weibull(2.8, 3.7) [ |
| 1/ | days | Gamma(3.5, 3.4) [ |
| Uniform(0, 0.25) | ||
| % | Uniform(0, 50) [ |
Descriptive statistics from the uncertainty analysis.
| Proportion of control area | Mean cumulative deaths | |
|---|---|---|
| Minimum | 0 | 0.63% |
| Maximum | 98.7% | 76.39% |
| Mean | 21.4% | 14.25% |
| Median | 0.6% | 12.56% |
| Variance | 11.2% | 74.81% |
Table 4 shows the descriptive statistics for ω and d.
Figure 5Empirical CDFs for the proportion of control area and the mean cumulative death obtained from the 1000 LHS scenarios. Figure 5 shows empirical cumulative distribution functions (CDFs) of ω and dobtained from 1000 LHS scenarios. (a) shows the empirical CDF for the proportion of control area, ω. (b) shows the empirical CDF for the mean cumulative death, d.
Partial rank correlation coefficients.
| Proportion of control area | Mean cumulative deaths | |||||
|---|---|---|---|---|---|---|
| Parameter | PRCC | p-value | Rank | PRCC | p-value | Rank |
| 0.182 | < .0001 | 4 | 0.816 | < .0001 | 2 | |
| 1/ | 0.579 | < .0001 | 3 | 0.747 | < .0001 | 3 |
| 1/ | -0.651 | < .0001 | 2 | -0.827 | < .0001 | 1 |
| -0.865 | < .0001 | 1 | 0.342 | < .0001 | 4 | |
| 0.087 | 0.0059 | 5 | -0.328 | < .0001 | 5 | |
Table 5 lists the partial rank correlation coefficients (PRCCs) for the performance measure ω and d.
Descriptive statistics of difference in cumulative deaths at exponential and gamma terminal time.
| Difference in cumulative deaths | |
|---|---|
| Minimum | 0 |
| Maximum | 32.55% |
| Mean | 3.49% |
| Median | 1.89% |
| Variance | 0.19% |
Table 6 lists the summary statistics of difference in cumulative deaths at exponential and gamma terminal time.