Literature DB >> 32865316

Aptamer-Mediated Reversible Transactivation of Gene Expression by Light.

Christian Renzl1, Ankana Kakoti1, Günter Mayer1,2.   

Abstract

The investigation and manipulation of cellular processes with subcellular resolution requires non-invasive tools with spatiotemporal precision and reversibility. Building on the interaction of the photoreceptor PAL with an RNA aptamer, we describe a variation of the CRISPR/dCAS9 system for light-controlled activation of gene expression. This platform significantly reduces the coding space required for genetic manipulation and provides a strong on-switch with almost no residual activity in the dark. It adds to the current set of modular building blocks for synthetic biological circuit design and is broadly applicable.
© 2020 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.

Entities:  

Keywords:  aptamers; gene expression; synthetic biology

Year:  2020        PMID: 32865316      PMCID: PMC7756287          DOI: 10.1002/anie.202009240

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  29 in total

1.  Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro E Trevino; Julia Joung; Omar O Abudayyeh; Clea Barcena; Patrick D Hsu; Naomi Habib; Jonathan S Gootenberg; Hiroshi Nishimasu; Osamu Nureki; Feng Zhang
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

2.  Cas9 gRNA engineering for genome editing, activation and repression.

Authors:  Samira Kiani; Alejandro Chavez; Marcelle Tuttle; Richard N Hall; Raj Chari; Dmitry Ter-Ovanesyan; Jason Qian; Benjamin W Pruitt; Jacob Beal; Suhani Vora; Joanna Buchthal; Emma J K Kowal; Mohammad R Ebrahimkhani; James J Collins; Ron Weiss; George Church
Journal:  Nat Methods       Date:  2015-09-07       Impact factor: 28.547

Review 3.  CRISPR/Cas9 and genome editing in Drosophila.

Authors:  Andrew R Bassett; Ji-Long Liu
Journal:  J Genet Genomics       Date:  2013-12-18       Impact factor: 4.275

4.  Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds.

Authors:  Jesse G Zalatan; Michael E Lee; Ricardo Almeida; Luke A Gilbert; Evan H Whitehead; Marie La Russa; Jordan C Tsai; Jonathan S Weissman; John E Dueber; Lei S Qi; Wendell A Lim
Journal:  Cell       Date:  2014-12-18       Impact factor: 41.582

5.  Highly efficient Cas9-mediated transcriptional programming.

Authors:  Alejandro Chavez; Jonathan Scheiman; Suhani Vora; Benjamin W Pruitt; Marcelle Tuttle; Eswar P R Iyer; Shuailiang Lin; Samira Kiani; Christopher D Guzman; Daniel J Wiegand; Dmitry Ter-Ovanesyan; Jonathan L Braff; Noah Davidsohn; Benjamin E Housden; Norbert Perrimon; Ron Weiss; John Aach; James J Collins; George M Church
Journal:  Nat Methods       Date:  2015-03-02       Impact factor: 28.547

6.  Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system.

Authors:  Tobias Anton; Sebastian Bultmann; Heinrich Leonhardt; Yolanda Markaki
Journal:  Nucleus       Date:  2014-03-12       Impact factor: 4.197

7.  Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression.

Authors:  Michelle L Luo; Adam S Mullis; Ryan T Leenay; Chase L Beisel
Journal:  Nucleic Acids Res       Date:  2014-10-17       Impact factor: 16.971

8.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

9.  Synthetic far-red light-mediated CRISPR-dCas9 device for inducing functional neuronal differentiation.

Authors:  Jiawei Shao; Meiyan Wang; Guiling Yu; Sucheng Zhu; Yuanhuan Yu; Boon Chin Heng; Jiali Wu; Haifeng Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

10.  Small molecule regulated sgRNAs enable control of genome editing in E. coli by Cas9.

Authors:  Roman S Iwasaki; Bagdeser A Ozdilek; Andrew D Garst; Alaksh Choudhury; Robert T Batey
Journal:  Nat Commun       Date:  2020-03-13       Impact factor: 14.919

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  3 in total

1.  Photoactivatable nanoCRISPR/Cas9 System Based on crRNA Reversibly Immobilized on Carbon Nanoparticles.

Authors:  Olga Semikolenova; Lubov Sakovina; Elizaveta Akhmetova; Daria Kim; Ivan Vokhtantsev; Victor Golyshev; Mariya Vorobyeva; Sergey Novopashin; Darya Novopashina
Journal:  Int J Mol Sci       Date:  2021-10-09       Impact factor: 5.923

2.  Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection.

Authors:  Andrea Di Gioacchino; Jonah Procyk; Marco Molari; John S Schreck; Yu Zhou; Yan Liu; Rémi Monasson; Simona Cocco; Petr Šulc
Journal:  PLoS Comput Biol       Date:  2022-09-29       Impact factor: 4.779

3.  Aptamer-Mediated Reversible Transactivation of Gene Expression by Light.

Authors:  Christian Renzl; Ankana Kakoti; Günter Mayer
Journal:  Angew Chem Int Ed Engl       Date:  2020-10-02       Impact factor: 15.336

  3 in total

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