Literature DB >> 32864763

Identification of novel variants in Iranian consanguineous pedigrees with nonsyndromic hearing loss by next-generation sequencing.

Fatemeh Bitarafan1, Seyed Yousef Seyedena1, Mahdi Mahmoudi2, Masoud Garshasbi3.   

Abstract

BACKGROUND: The extremely high genetic heterogeneity of hearing loss due to diverse group of genes encoding proteins required for development, function, and maintenance of the complex auditory system makes the genetic diagnosis of this disease challenging. Up to now, 121 different genes have been identified for nonsyndromic hearing loss (NSHL), of which 76 genes are responsible for the most common forms of NSHL, autosomal recessive nonsyndromic hearing loss (ARNSHL).
METHODS: After excluding mutations in the most common ARNSHL gene, GJB2, by Sanger sequencing, genetic screening for a panel of genes responsible for hereditary hearing impairment performed in 9 individuals with ARNSHL from unrelated Iranian consanguineous pedigrees.
RESULTS: One compound heterozygote and eight homozygote variants, of which five are novel, were identified: CDH23:p.(Glu1970Lys), and p.(Ala1072Asp), GIPC3:p.(Asn82Ser), and (p.Thr41Lys), MYO7A:p.[Phe456Phe]; p.[Met708Val], and p.(Gly163Arg), TECTA:p.(Leu17Leufs*19), OTOF:c.1392+1G>A, and TRIOBP:p.(Arg1068*). Sanger sequencing confirmed the segregation of the variants with the disease in each family.
CONCLUSION: Finding more variants and expanding the spectrum of hearing impairment mutations can increase the diagnostic value of molecular testing in the screening of patients and can improve counseling to minimize the risk of having affected children for at risk couples.
© 2020 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC.

Entities:  

Keywords:  Iranian consanguineous pedigrees; autosomal recessive nonsyndromic hearing loss (ARNSHL); next-generation sequencing (NGS); novel variants

Mesh:

Year:  2020        PMID: 32864763      PMCID: PMC7755797          DOI: 10.1002/jcla.23544

Source DB:  PubMed          Journal:  J Clin Lab Anal        ISSN: 0887-8013            Impact factor:   3.124


  37 in total

Review 1.  Heterogeneity of Hereditary Hearing Loss in Iran: a Comprehensive Review.

Authors:  Maryam Beheshtian; Mojgan Babanejad; Hela Azaiez; Niloofar Bazazzadegan; Diana Kolbe; Christina Sloan-Heggen; Sanaz Arzhangi; Kevin Booth; Marzieh Mohseni; Kathy Frees; Mohammad Hossein Azizi; Ahmad Daneshi; Mohammad Farhadi; Kimia Kahrizi; Richard Jh Smith; Hossein Najmabadi
Journal:  Arch Iran Med       Date:  2016-10-01       Impact factor: 1.354

2.  Consanguinity and hearing impairment in developing countries: a custom to be discouraged.

Authors:  Siraj Zakzouk
Journal:  J Laryngol Otol       Date:  2002-10       Impact factor: 1.469

3.  A novel TECTA mutation causes ARNSHL.

Authors:  Samira Asgharzade; Mohammad Amin Tabatabaiefar; Mohammad Hossein Modarressi; Mohammad Hossein Ghahremani; Somayeh Reiisi; Parisa Tahmasebi; Fatemeh Abdollahnejad; Morteza Hashemzadeh Chaleshtori
Journal:  Int J Pediatr Otorhinolaryngol       Date:  2016-11-15       Impact factor: 1.675

4.  Screening of 38 genes identifies mutations in 62% of families with nonsyndromic deafness in Turkey.

Authors:  Duygu Duman; Asli Sirmaci; F Basak Cengiz; Hilal Ozdag; Mustafa Tekin
Journal:  Genet Test Mol Biomarkers       Date:  2010-11-30

5.  Novel OTOF gene mutations identified using a massively parallel DNA sequencing technique in DFNB9 deafness.

Authors:  Yanfei Wang; Yu Lu; Jing Cheng; Lei Zhang; Dongyi Han; Huijun Yuan
Journal:  Acta Otolaryngol       Date:  2018-08-03       Impact factor: 1.494

Review 6.  Genetics of non-syndromic hearing loss in the Middle East.

Authors:  Hossein Najmabadi; Kimia Kahrizi
Journal:  Int J Pediatr Otorhinolaryngol       Date:  2014-09-04       Impact factor: 1.675

7.  OTOF mutation screening in Japanese severe to profound recessive hearing loss patients.

Authors:  Yoh-ichiro Iwasa; Shin-ya Nishio; Hidekane Yoshimura; Yukihiko Kanda; Kozo Kumakawa; Satoko Abe; Yasushi Naito; Kyoko Nagai; Shin-ichi Usami
Journal:  BMC Med Genet       Date:  2013-09-22       Impact factor: 2.103

8.  Identification of CDH23 mutations in Korean families with hearing loss by whole-exome sequencing.

Authors:  Hae-Mi Woo; Hong-Joon Park; Mi-Hyun Park; Bo-Young Kim; Joong-Wook Shin; Won Gi Yoo; Soo Kyung Koo
Journal:  BMC Med Genet       Date:  2014-04-28       Impact factor: 2.103

9.  Comprehensive Analysis of Deafness Genes in Families with Autosomal Recessive Nonsyndromic Hearing Loss.

Authors:  Tahir Atik; Huseyin Onay; Ayca Aykut; Guney Bademci; Tayfun Kirazli; Mustafa Tekin; Ferda Ozkinay
Journal:  PLoS One       Date:  2015-11-11       Impact factor: 3.240

10.  Genetics Evaluation Guidelines for the Etiologic Diagnosis of Congenital Hearing Loss. Genetic Evaluation of Congenital Hearing Loss Expert Panel. ACMG statement.

Authors: 
Journal:  Genet Med       Date:  2002 May-Jun       Impact factor: 8.822

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  3 in total

1.  Presentation of potential genes and deleterious variants associated with non-syndromic hearing loss: a computational approach.

Authors:  Manisha Ray; Surya Narayan Rath; Saurav Sarkar; Mukund Namdev Sable
Journal:  Genomics Inform       Date:  2022-03-31

2.  Genetic Variant c.245A>G (p.Asn82Ser) in GIPC3 Gene Is a Frequent Cause of Hereditary Nonsyndromic Sensorineural Hearing Loss in Chuvash Population.

Authors:  Nika V Petrova; Andrey V Marakhonov; Natalia V Balinova; Anna V Abrukova; Fedor A Konovalov; Sergey I Kutsev; Rena A Zinchenko
Journal:  Genes (Basel)       Date:  2021-05-27       Impact factor: 4.096

3.  Identification of novel variants in Iranian consanguineous pedigrees with nonsyndromic hearing loss by next-generation sequencing.

Authors:  Fatemeh Bitarafan; Seyed Yousef Seyedena; Mahdi Mahmoudi; Masoud Garshasbi
Journal:  J Clin Lab Anal       Date:  2020-08-30       Impact factor: 3.124

  3 in total

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