Literature DB >> 32860016

Genetics meets proteomics: perspectives for large population-based studies.

Karsten Suhre1, Mark I McCarthy2,3,4,5, Jochen M Schwenk6.   

Abstract

Proteomic analysis of cells, tissues and body fluids has generated valuable insights into the complex processes influencing human biology. Proteins represent intermediate phenotypes for disease and provide insight into how genetic and non-genetic risk factors are mechanistically linked to clinical outcomes. Associations between protein levels and DNA sequence variants that colocalize with risk alleles for common diseases can expose disease-associated pathways, revealing novel drug targets and translational biomarkers. However, genome-wide, population-scale analyses of proteomic data are only now emerging. Here, we review current findings from studies of the plasma proteome and discuss their potential for advancing biomedical translation through the interpretation of genome-wide association analyses. We highlight the challenges faced by currently available technologies and provide perspectives relevant to their future application in large-scale biobank studies.

Entities:  

Year:  2020        PMID: 32860016     DOI: 10.1038/s41576-020-0268-2

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  127 in total

Review 1.  The human plasma proteome: history, character, and diagnostic prospects.

Authors:  N Leigh Anderson; Norman G Anderson
Journal:  Mol Cell Proteomics       Date:  2002-11       Impact factor: 5.911

2.  Human metabolic individuality in biomedical and pharmaceutical research.

Authors:  So-Youn Shin; Ann-Kristin Petersen; Nicole Soranzo; Christian Gieger; Karsten Suhre; Robert P Mohney; David Meredith; Brigitte Wägele; Elisabeth Altmaier; Panos Deloukas; Jeanette Erdmann; Elin Grundberg; Christopher J Hammond; Martin Hrabé de Angelis; Gabi Kastenmüller; Anna Köttgen; Florian Kronenberg; Massimo Mangino; Christa Meisinger; Thomas Meitinger; Hans-Werner Mewes; Michael V Milburn; Cornelia Prehn; Johannes Raffler; Janina S Ried; Werner Römisch-Margl; Nilesh J Samani; Kerrin S Small; H-Erich Wichmann; Guangju Zhai; Thomas Illig; Tim D Spector; Jerzy Adamski
Journal:  Nature       Date:  2011-08-31       Impact factor: 49.962

3.  [Reversal by thiamine and pyridoxal of the inhibition of growth of Escherichia coli produced by 3-hydroxythalidomide].

Authors:  R Jasmin; W J Johnson
Journal:  Can J Microbiol       Date:  1966-04       Impact factor: 2.419

4.  Genetic Architecture of the Cardiovascular Risk Proteome.

Authors:  Mark D Benson; Qiong Yang; Debby Ngo; Yineng Zhu; Dongxiao Shen; Laurie A Farrell; Sumita Sinha; Michelle J Keyes; Ramachandran S Vasan; Martin G Larson; J Gustav Smith; Thomas J Wang; Robert E Gerszten
Journal:  Circulation       Date:  2017-12-19       Impact factor: 29.690

5.  Universal APEEGE (anatomical placement EEG electrodes) system.

Authors:  E L Gibbs; T J Gibbs
Journal:  Clin Electroencephalogr       Date:  1984-01

6.  Co-regulatory networks of human serum proteins link genetics to disease.

Authors:  Valur Emilsson; Marjan Ilkov; John R Lamb; Lori L Jennings; Vilmundur Gudnason; Nancy Finkel; Elias F Gudmundsson; Rebecca Pitts; Heather Hoover; Valborg Gudmundsdottir; Shane R Horman; Thor Aspelund; Le Shu; Vladimir Trifonov; Sigurdur Sigurdsson; Andrei Manolescu; Jun Zhu; Örn Olafsson; Johanna Jakobsdottir; Scott A Lesley; Jeremy To; Jia Zhang; Tamara B Harris; Lenore J Launer; Bin Zhang; Gudny Eiriksdottir; Xia Yang; Anthony P Orth
Journal:  Science       Date:  2018-08-02       Impact factor: 47.728

Review 7.  Validating therapeutic targets through human genetics.

Authors:  Robert M Plenge; Edward M Scolnick; David Altshuler
Journal:  Nat Rev Drug Discov       Date:  2013-07-19       Impact factor: 84.694

Review 8.  Genetics of human metabolism: an update.

Authors:  Gabi Kastenmüller; Johannes Raffler; Christian Gieger; Karsten Suhre
Journal:  Hum Mol Genet       Date:  2015-07-09       Impact factor: 6.150

9.  The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).

Authors:  Jacqueline MacArthur; Emily Bowler; Maria Cerezo; Laurent Gil; Peggy Hall; Emma Hastings; Heather Junkins; Aoife McMahon; Annalisa Milano; Joannella Morales; Zoe May Pendlington; Danielle Welter; Tony Burdett; Lucia Hindorff; Paul Flicek; Fiona Cunningham; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

10.  A genome-wide association study identifies protein quantitative trait loci (pQTLs).

Authors:  David Melzer; John R B Perry; Dena Hernandez; Anna-Maria Corsi; Kara Stevens; Ian Rafferty; Fulvio Lauretani; Anna Murray; J Raphael Gibbs; Giuseppe Paolisso; Sajjad Rafiq; Javier Simon-Sanchez; Hana Lango; Sonja Scholz; Michael N Weedon; Sampath Arepalli; Neil Rice; Nicole Washecka; Alison Hurst; Angela Britton; William Henley; Joyce van de Leemput; Rongling Li; Anne B Newman; Greg Tranah; Tamara Harris; Vijay Panicker; Colin Dayan; Amanda Bennett; Mark I McCarthy; Aimo Ruokonen; Marjo-Riitta Jarvelin; Jack Guralnik; Stefania Bandinelli; Timothy M Frayling; Andrew Singleton; Luigi Ferrucci
Journal:  PLoS Genet       Date:  2008-05-09       Impact factor: 5.917

View more
  45 in total

Review 1.  Advancing the use of genome-wide association studies for drug repurposing.

Authors:  William R Reay; Murray J Cairns
Journal:  Nat Rev Genet       Date:  2021-07-23       Impact factor: 53.242

Review 2.  Measuring biological age using omics data.

Authors:  Jarod Rutledge; Hamilton Oh; Tony Wyss-Coray
Journal:  Nat Rev Genet       Date:  2022-06-17       Impact factor: 53.242

Review 3.  Advances in integrative African genomics.

Authors:  Chao Zhang; Matthew E B Hansen; Sarah A Tishkoff
Journal:  Trends Genet       Date:  2021-11-02       Impact factor: 11.639

4.  Proteomic biomarkers of Kleine-Levin syndrome.

Authors:  Julien Hédou; Katie L Cederberg; Aditya Ambati; Ling Lin; Neal Farber; Yves Dauvilliers; Mohammed Quadri; Patrice Bourgin; Giuseppe Plazzi; Olivier Andlauer; Seung-Chul Hong; Yu-Shu Huang; Smaranda Leu-Semenescu; Isabelle Arnulf; Shahrad Taheri; Emmanuel Mignot
Journal:  Sleep       Date:  2022-09-08       Impact factor: 6.313

Review 5.  The Propagation of Racial Disparities in Cardiovascular Genomics Research.

Authors:  Shoa L Clarke; Themistocles L Assimes; Catherine Tcheandjieu
Journal:  Circ Genom Precis Med       Date:  2021-08-31

6.  Prediction and Experimental Validation of a New Salinity-Responsive Cis-Regulatory Element (CRE) in a Tilapia Cell Line.

Authors:  Chanhee Kim; Xiaodan Wang; Dietmar Kültz
Journal:  Life (Basel)       Date:  2022-05-25

7.  Systems-Level Analysis of Genetic Variants Reveals Functional and Spatiotemporal Context in Treatment-resistant Schizophrenia.

Authors:  Fernanda Talarico; Giovany Oliveira Costa; Vanessa Kiyomi Ota; Marcos Leite Santoro; Cristiano Noto; Ary Gadelha; Rodrigo Bressan; Hatylas Azevedo; Sintia Iole Belangero
Journal:  Mol Neurobiol       Date:  2022-03-12       Impact factor: 5.590

8.  Therapeutic Targets for Heart Failure Identified Using Proteomics and Mendelian Randomization.

Authors:  Anders Mälarstig; Aroon D Hingorani; R Thomas Lumbers; Albert Henry; María Gordillo-Marañón; Chris Finan; Amand F Schmidt; João Pedro Ferreira; Ravi Karra; Johan Sundström; Lars Lind; Johan Ärnlöv; Faiez Zannad
Journal:  Circulation       Date:  2022-03-18       Impact factor: 39.918

9.  Plasma Proteomics of Renal Function: A Trans-ethnic Meta-analysis and Mendelian Randomization Study.

Authors:  Pamela Matías-García; Rory Wilson; Qi Guo; Shaza Zaghlool; James Eales; Xiaoguang Xu; Fadi Charchar; John Dormer; Haifa Maalmi; Pascal Schlosser; Mohamed Elhadad; Jana Nano; Sapna Sharma; Annette Peters; Alessia Fornoni; Dennis Mook-Kanamori; Juliane Winkelmann; John Danesh; Emanuele Di Angelantonio; Willem Ouwehand; Nicholas Watkins; David Roberts; Agnese Petrera; Johannes Graumann; Wolfgang Koenig; Kristian Hveem; Christian Jonasson; Anna Köttgen; Adam Butterworth; Marco Prunotto; Stefanie Hauck; Christian Herder; Karsten Suhre; Christian Gieger; Maciej Tomaszewski; Alexander Teumer; Melanie Waldenberger
Journal:  J Am Soc Nephrol       Date:  2021-06-16       Impact factor: 14.978

Review 10.  Cancer diagnostics based on plasma protein biomarkers: hard times but great expectations.

Authors:  Ulf Landegren; Maria Hammond
Journal:  Mol Oncol       Date:  2020-11-17       Impact factor: 6.603

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.