| Literature DB >> 32858935 |
Tana Tandarić1, Alja Prah2,3, Jernej Stare2, Janez Mavri2, Robert Vianello1.
Abstract
Monoamine oxidases (MAOs) catalyze the degradation of a very broad range of biogenic and dietary amines including many neurotransmitters in the brain, whose imbalance is extensively linked with the biochemical pathology of various neurological disorders, and are, accordingly, used as primary pharmacological targets to treat these debilitating cognitive diseases. Still, despite this practical significance, the precise molecular mechanism underlying the irreversible MAO inhibition with clinically used propargylamine inhibitors rasagiline and selegiline is still not unambiguously determined, which hinders the rational design of improved inhibitors devoid of side effects current drugs are experiencing. To address this challenge, we present empirical valence bond QM/MM simulations of the rate-limiting step of the MAO inhibition involving the hydride anion transfer from the inhibitor α-carbon onto the N5 atom of the flavin adenin dinucleotide (FAD) cofactor. The proposed mechanism is strongly supported by the obtained free energy profiles, which confirm a higher reactivity of selegiline over rasagiline, while the calculated difference in the activation Gibbs energies of ΔΔG‡ = 3.1 kcal mol-1 is found to be in very good agreement with that from the measured literature kinact values that predict a 1.7 kcal mol-1 higher selegiline reactivity. Given the similarity with the hydride transfer mechanism during the MAO catalytic activity, these results verify that both rasagiline and selegiline are mechanism-based irreversible inhibitors and offer guidelines in designing new and improved inhibitors, which are all clinically employed in treating a variety of neuropsychiatric and neurodegenerative conditions.Entities:
Keywords: antiparkinsonian drugs; flavoenzymes; hydride transfer; irreversible inhibition; monoamine oxidase; neurodegeneration
Mesh:
Substances:
Year: 2020 PMID: 32858935 PMCID: PMC7503497 DOI: 10.3390/ijms21176151
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Chemical structure of the MAO B irreversible inhibitors and the FAD cofactor discussed in this work. The relevant atom labeling used throughout the text is also indicated.
Figure 2The initial rate-limiting step and the corresponding Empirical Valence Bond (EVB) states for the irreversible inhibition of MAO enzymes with propargylamine inhibitors based on a direct hydride abstraction studied here, which ultimately results in the inhibitor–FAD flavocyanine adduct as shown in ref. [52].
Relative Gibbs free energies for the relevant states of the reference aqueous-phase hydride abstraction reaction among rasagiline or selegiline and lumiflavin calculated at the (SMD)/M06–2X/6–31 + G(d,p) level of theory. The derived EVB off-diagonal coupling term (H) and the solution-phase shift (α0) are also presented. All values are in kcal mol−1.
| Inhibitor | Reactant Complex | Transition State | Intermediate | H | α0 |
|---|---|---|---|---|---|
| Rasagiline | 0.0 | 30.60 | 19.18 | 44.34 | 106.7 |
| Selegiline | 0.0 | 31.11 | 17.29 | 43.59 | 80.40 |
Figure 3Free energy profiles for the irreversible inhibition of MAO B with rasagiline (left) and selegiline (right). The reaction coordinate is defined as the energy difference between EVB states 2 and 1 and is commonly used in displaying EVB free energy profiles.
Figure 4Transition state structures of the MAO B active site with the reacting rasagiline (RAS, left) and selegiline (SEL, right). The flavin cofactor is denoted by FAD. The transferring hydride ion is located about halfway between the reactive C(α) atom of each inhibitor and the N5 atom on flavin.
Figure 5The structure of the hydrated MAO B with rasagiline (in red) and selegiline (in violet) placed in the active site. The position of the FAD cofactor is also shown in the stick representation.