Literature DB >> 28493715

Recent Trends in Quantum Chemical Modeling of Enzymatic Reactions.

Fahmi Himo1.   

Abstract

The quantum chemical cluster approach is a powerful method for investigating enzymatic reactions. Over the past two decades, a large number of highly diverse systems have been studied and a great wealth of mechanistic insight has been developed using this technique. This Perspective reviews the current status of the methodology. The latest technical developments are highlighted, and challenges are discussed. Some recent applications are presented to illustrate the capabilities and progress of this approach, and likely future directions are outlined.

Year:  2017        PMID: 28493715     DOI: 10.1021/jacs.7b02671

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

1.  Theoretical study of the mechanism of the manganese catalase KatB.

Authors:  Xi-Xi Yang; Qiu-Yun Mao; Xiao-Ting An; Xi-Chen Li; Per E M Siegbahn; Guang-Ju Chen; Hong-Wei Tan
Journal:  J Biol Inorg Chem       Date:  2018-12-05       Impact factor: 3.358

2.  Revealing quantum mechanical effects in enzyme catalysis with large-scale electronic structure simulation.

Authors:  Zhongyue Yang; Rimsha Mehmood; Mengyi Wang; Helena W Qi; Adam H Steeves; Heather J Kulik
Journal:  React Chem Eng       Date:  2018-11-29       Impact factor: 4.239

3.  Mechanism and Structure of γ-Resorcylate Decarboxylase.

Authors:  Xiang Sheng; Yury Patskovsky; Anna Vladimirova; Jeffrey B Bonanno; Steven C Almo; Fahmi Himo; Frank M Raushel
Journal:  Biochemistry       Date:  2018-01-19       Impact factor: 3.162

4.  Ground State Destabilization in Uracil DNA Glycosylase: Let's Not Forget "Tautomeric Strain" in Substrates.

Authors:  Ranjita Das; Erik A Vázquez-Montelongo; G Andrés Cisneros; Judy I Wu
Journal:  J Am Chem Soc       Date:  2019-08-26       Impact factor: 15.419

5.  Theoretical Study on the Mechanism of the Acylate Reaction of β-Lactamase.

Authors:  Wen-Mei Wei; Yan-Li Xu; Ren-Hui Zheng; Tingting Zhao; Weijun Fang; Yi-De Qin
Journal:  ACS Omega       Date:  2021-05-07

6.  Empirical Valence Bond Simulations Suggest a Direct Hydride Transfer Mechanism for Human Diamine Oxidase.

Authors:  Aleksandra Maršavelski; Dušan Petrović; Paul Bauer; Robert Vianello; Shina Caroline Lynn Kamerlin
Journal:  ACS Omega       Date:  2018-04-02

Review 7.  Mechanisms of metal-dependent non-redox decarboxylases from quantum chemical calculations.

Authors:  Xiang Sheng; Fahmi Himo
Journal:  Comput Struct Biotechnol J       Date:  2021-05-26       Impact factor: 7.271

8.  Cation-π interactions in protein-ligand binding: theory and data-mining reveal different roles for lysine and arginine.

Authors:  Kiran Kumar; Shin M Woo; Thomas Siu; Wilian A Cortopassi; Fernanda Duarte; Robert S Paton
Journal:  Chem Sci       Date:  2018-01-31       Impact factor: 9.825

9.  A Theoretical Study of the Benzoylformate Decarboxylase Reaction Mechanism.

Authors:  Ferran Planas; Xiang Sheng; Michael J McLeish; Fahmi Himo
Journal:  Front Chem       Date:  2018-06-26       Impact factor: 5.221

10.  QM Cluster or QM/MM in Computational Enzymology: The Test Case of LigW-Decarboxylase.

Authors:  Mario Prejanò; Tiziana Marino; Nino Russo
Journal:  Front Chem       Date:  2018-06-28       Impact factor: 5.221

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.