Literature DB >> 32839595

Glis1 facilitates induction of pluripotency via an epigenome-metabolome-epigenome signalling cascade.

Linpeng Li1,2, Keshi Chen1,2, Tianyu Wang1,2, Yi Wu1,2, Guangsuo Xing1,2, Mengqi Chen1,2, Zhihong Hao1,2, Cheng Zhang3, Jinye Zhang3, Bochao Ma1,2, Zihuang Liu1,2, Hao Yuan1,2, Zijian Liu1,2, Qi Long1,2, Yanshuang Zhou1,2, Juntao Qi1,2, Danyun Zhao1,2, Mi Gao1,2, Duanqing Pei1,2, Jinfu Nie1,2, Dan Ye3, Guangjin Pan1,2, Xingguo Liu4,5.   

Abstract

Somatic cell reprogramming provides insight into basic principles of cell fate determination, which remain poorly understood. Here we show that the transcription factor Glis1 induces multi-level epigenetic and metabolic remodelling in stem cells that facilitates the induction of pluripotency. We find that Glis1 enables reprogramming of senescent cells into pluripotent cells and improves genome stability. During early phases of reprogramming, Glis1 directly binds to and opens chromatin at glycolytic genes, whereas it closes chromatin at somatic genes to upregulate glycolysis. Subsequently, higher glycolytic flux enhances cellular acetyl-CoA and lactate levels, thereby enhancing acetylation (H3K27Ac) and lactylation (H3K18la) at so-called 'second-wave' and pluripotency gene loci, opening them up to facilitate cellular reprogramming. Our work highlights Glis1 as a powerful reprogramming factor, and reveals an epigenome-metabolome-epigenome signalling cascade that involves the glycolysis-driven coordination of histone acetylation and lactylation in the context of cell fate determination.

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Year:  2020        PMID: 32839595     DOI: 10.1038/s42255-020-0267-9

Source DB:  PubMed          Journal:  Nat Metab        ISSN: 2522-5812


  48 in total

1.  A XEN-like State Bridges Somatic Cells to Pluripotency during Chemical Reprogramming.

Authors:  Yang Zhao; Ting Zhao; Jingyang Guan; Xu Zhang; Yao Fu; Junqing Ye; Jialiang Zhu; Gaofan Meng; Jian Ge; Susu Yang; Lin Cheng; Yaqin Du; Chaoran Zhao; Ting Wang; Linlin Su; Weifeng Yang; Hongkui Deng
Journal:  Cell       Date:  2015-12-10       Impact factor: 41.582

2.  Hypoxia-inducible factors have distinct and stage-specific roles during reprogramming of human cells to pluripotency.

Authors:  Julie Mathieu; Wenyu Zhou; Yalan Xing; Henrik Sperber; Amy Ferreccio; Zsuzsa Agoston; Kavitha T Kuppusamy; Randall T Moon; Hannele Ruohola-Baker
Journal:  Cell Stem Cell       Date:  2014-03-20       Impact factor: 24.633

3.  Hybrid Cellular Metabolism Coordinated by Zic3 and Esrrb Synergistically Enhances Induction of Naive Pluripotency.

Authors:  Masamitsu Sone; Nobuhiro Morone; Tomonori Nakamura; Akito Tanaka; Keisuke Okita; Knut Woltjen; Masato Nakagawa; John E Heuser; Yasuhiro Yamada; Shinya Yamanaka; Takuya Yamamoto
Journal:  Cell Metab       Date:  2017-05-02       Impact factor: 27.287

4.  Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.

Authors:  Jose Luis Sardina; Samuel Collombet; Tian V Tian; Antonio Gómez; Bruno Di Stefano; Clara Berenguer; Justin Brumbaugh; Ralph Stadhouders; Carolina Segura-Morales; Marta Gut; Ivo G Gut; Simon Heath; Sergi Aranda; Luciano Di Croce; Konrad Hochedlinger; Denis Thieffry; Thomas Graf
Journal:  Cell Stem Cell       Date:  2018-09-13       Impact factor: 24.633

5.  LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency.

Authors:  Jin Zhang; Sutheera Ratanasirintrawoot; Sriram Chandrasekaran; Zhaoting Wu; Scott B Ficarro; Chunxiao Yu; Christian A Ross; Davide Cacchiarelli; Qing Xia; Marc Seligson; Gen Shinoda; Wen Xie; Patrick Cahan; Longfei Wang; Shyh-Chang Ng; Supisara Tintara; Cole Trapnell; Tamer Onder; Yuin-Han Loh; Tarjei Mikkelsen; Piotr Sliz; Michael A Teitell; John M Asara; Jarrod A Marto; Hu Li; James J Collins; George Q Daley
Journal:  Cell Stem Cell       Date:  2016-06-16       Impact factor: 24.633

6.  Chromatin Accessibility Dynamics during iPSC Reprogramming.

Authors:  Dongwei Li; Jing Liu; Xuejie Yang; Chunhua Zhou; Jing Guo; Chuman Wu; Yue Qin; Lin Guo; Jiangping He; Shenyong Yu; He Liu; Xiaoshan Wang; Fang Wu; Junqi Kuang; Andrew P Hutchins; Jiekai Chen; Duanqing Pei
Journal:  Cell Stem Cell       Date:  2017-12-07       Impact factor: 24.633

7.  Somatic oxidative bioenergetics transitions into pluripotency-dependent glycolysis to facilitate nuclear reprogramming.

Authors:  Clifford D L Folmes; Timothy J Nelson; Almudena Martinez-Fernandez; D Kent Arrell; Jelena Zlatkovic Lindor; Petras P Dzeja; Yasuhiro Ikeda; Carmen Perez-Terzic; Andre Terzic
Journal:  Cell Metab       Date:  2011-08-03       Impact factor: 27.287

8.  Fatty acid synthesis is critical for stem cell pluripotency via promoting mitochondrial fission.

Authors:  Lihua Wang; Tong Zhang; Lin Wang; Yongping Cai; Xiuying Zhong; Xiaoping He; Lan Hu; Shengya Tian; Mian Wu; Lijian Hui; Huafeng Zhang; Ping Gao
Journal:  EMBO J       Date:  2017-04-04       Impact factor: 11.598

9.  Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

Authors:  Kazutoshi Takahashi; Shinya Yamanaka
Journal:  Cell       Date:  2006-08-10       Impact factor: 41.582

10.  A molecular roadmap of reprogramming somatic cells into iPS cells.

Authors:  Jose M Polo; Endre Anderssen; Ryan M Walsh; Benjamin A Schwarz; Christian M Nefzger; Sue Mei Lim; Marti Borkent; Effie Apostolou; Sara Alaei; Jennifer Cloutier; Ori Bar-Nur; Sihem Cheloufi; Matthias Stadtfeld; Maria Eugenia Figueroa; Daisy Robinton; Sridaran Natesan; Ari Melnick; Jinfang Zhu; Sridhar Ramaswamy; Konrad Hochedlinger
Journal:  Cell       Date:  2012-12-21       Impact factor: 41.582

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  25 in total

1.  Plin2-mediated lipid droplet mobilization accelerates exit from pluripotency by lipidomic remodeling and histone acetylation.

Authors:  Yi Wu; Keshi Chen; Linpeng Li; Zhihong Hao; Tianyu Wang; Yang Liu; Guangsuo Xing; Zichao Liu; Heying Li; Hao Yuan; Jianghuan Lu; Cheng Zhang; Jinye Zhang; Danyun Zhao; Junwei Wang; Jinfu Nie; Dan Ye; Guangjin Pan; Wai-Yee Chan; Xingguo Liu
Journal:  Cell Death Differ       Date:  2022-05-25       Impact factor: 15.828

Review 2.  Metabolic Regulation: A Potential Strategy for Rescuing Stem Cell Senescence.

Authors:  Wenxin Zhang; Jiayu Li; Yuchi Duan; Yanlin Li; Yanan Sun; Hui Sun; Xiao Yu; Xingyu Gao; Chang Zhang; Haiying Zhang; Yingai Shi; Xu He
Journal:  Stem Cell Rev Rep       Date:  2022-03-08       Impact factor: 6.692

3.  Per- and polyfluoroalkyl substances, epigenetic age and DNA methylation: a cross-sectional study of firefighters.

Authors:  Jaclyn M Goodrich; Miriam M Calkins; Alberto J Caban-Martinez; Todd Stueckle; Casey Grant; Antonia M Calafat; Amy Nematollahi; Alesia M Jung; Judith M Graber; Timothy Jenkins; Angela L Slitt; Alisa Dewald; Julianne Cook Botelho; Shawn Beitel; Sally Littau; John Gulotta; Darin Wallentine; Jeff Hughes; Charles Popp; Jefferey L Burgess
Journal:  Epigenomics       Date:  2021-10-21       Impact factor: 4.357

4.  MAP2K6 remodels chromatin and facilitates reprogramming by activating Gatad2b-phosphorylation dependent heterochromatin loosening.

Authors:  Guangsuo Xing; Zichao Liu; Luyuan Huang; Danyun Zhao; Tao Wang; Hao Yuan; Yi Wu; Linpeng Li; Qi Long; Yanshuang Zhou; Zhihong Hao; Yang Liu; Jianghuan Lu; Shiting Li; Jieying Zhu; Bo Wang; Junwei Wang; Jing Liu; Jiekai Chen; Duanqing Pei; Xingguo Liu; Keshi Chen
Journal:  Cell Death Differ       Date:  2021-11-24       Impact factor: 12.067

5.  Identification of Optimal Expression Parameters and Purification of a Codon-Optimized Human GLIS1 Transcription Factor from Escherichia coli.

Authors:  Chandrima Dey; Vishalini Venkatesan; Rajkumar P Thummer
Journal:  Mol Biotechnol       Date:  2021-09-15       Impact factor: 2.695

Review 6.  Lactylation: a Passing Fad or the Future of Posttranslational Modification.

Authors:  Qi Xin; Hai Wang; Qinglin Li; Sinan Liu; Kai Qu; Chang Liu; Jingyao Zhang
Journal:  Inflammation       Date:  2022-02-27       Impact factor: 4.657

7.  Unconventional metabolites in chromatin regulation.

Authors:  Liubov Gapa; Huda Alfardus; Wolfgang Fischle
Journal:  Biosci Rep       Date:  2022-01-28       Impact factor: 3.840

8.  Forkhead box family transcription factors as versatile regulators for cellular reprogramming to pluripotency.

Authors:  Meijun Fu; Huan Chen; Zepo Cai; Yihang Yang; Ziyu Feng; Mengying Zeng; Lijun Chen; Yue Qin; Baomei Cai; Pinghui Zhu; Chunhua Zhou; Shengyong Yu; Jing Guo; Jing Liu; Shangtao Cao; Duanqing Pei
Journal:  Cell Regen       Date:  2021-07-02

Review 9.  Lactylation, a Novel Metabolic Reprogramming Code: Current Status and Prospects.

Authors:  An-Na Chen; Yan Luo; Yu-Han Yang; Jian-Tao Fu; Xiu-Mei Geng; Jun-Ping Shi; Jin Yang
Journal:  Front Immunol       Date:  2021-06-10       Impact factor: 7.561

10.  Histone lactylation drives oncogenesis by facilitating m6A reader protein YTHDF2 expression in ocular melanoma.

Authors:  Jie Yu; Peiwei Chai; Minyue Xie; Shengfang Ge; Jing Ruan; Xianqun Fan; Renbing Jia
Journal:  Genome Biol       Date:  2021-03-16       Impact factor: 13.583

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